RNA–Protein interactions for RNA: ENST00000495122.1

CBX4-204, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 490 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-204ENST00000495122 PAX3P23760 479 aa17.11■□□□□ 0.33
CBX4-204ENST00000495122 HSPA9P38646 679 aaKnown RBP17.11■□□□□ 0.33
CBX4-204ENST00000495122 CAMK1Q14012 370 aa17.11■□□□□ 0.33
CBX4-204ENST00000495122 GLIPR1L2Q4G1C9 344 aa17.11■□□□□ 0.33
CBX4-204ENST00000495122 ZNF394Q53GI3 561 aa17.11■□□□□ 0.33
CBX4-204ENST00000495122 UBXN11Q5T124 520 aa17.11■□□□□ 0.33
CBX4-204ENST00000495122 C9orf57Q5W0N0 161 aa17.11■□□□□ 0.33
CBX4-204ENST00000495122 DUPD1Q68J44 220 aa17.11■□□□□ 0.33
CBX4-204ENST00000495122 PTCRAQ6ISU1 281 aaPredicted RBP17.11■□□□□ 0.33
CBX4-204ENST00000495122 DENND1BQ6P3S1 775 aa17.11■□□□□ 0.33
CBX4-204ENST00000495122 SLC24A5Q71RS6 500 aa17.11■□□□□ 0.33
CBX4-204ENST00000495122 DPH6Q7L8W6 267 aa17.11■□□□□ 0.33
CBX4-204ENST00000495122 STK32AQ8WU08 396 aa17.11■□□□□ 0.33
CBX4-204ENST00000495122 IFT81Q8WYA0 676 aa17.11■□□□□ 0.33
CBX4-204ENST00000495122 MAGOHBQ96A72 148 aaKnown RBP17.11■□□□□ 0.33
CBX4-204ENST00000495122 EIF2AQ9BY44 585 aaKnown RBP17.11■□□□□ 0.33
CBX4-204ENST00000495122 ALG13Q9NP73 1137 aaKnown RBP17.11■□□□□ 0.33
CBX4-204ENST00000495122 SLC38A7Q9NVC3 462 aa17.11■□□□□ 0.33
CBX4-204ENST00000495122 CHORDC1Q9UHD1 332 aaPredicted RBP17.11■□□□□ 0.33
CBX4-204ENST00000495122 NFU1Q9UMS0 254 aa17.11■□□□□ 0.33
CBX4-204ENST00000495122 EFR3BQ9Y2G0 817 aa17.11■□□□□ 0.33
CBX4-204ENST00000495122 PCDHB7Q9Y5E2 793 aa17.11■□□□□ 0.33
CBX4-204ENST00000495122 GRXCR2A6NFK2 248 aa17.1■□□□□ 0.33
CBX4-204ENST00000495122 H3BQ06 376 aaPredicted RBP17.1■□□□□ 0.33
CBX4-204ENST00000495122 PIRO00625 290 aa17.1■□□□□ 0.33
CBX4-204ENST00000495122 TTI1O43156 1089 aa17.1■□□□□ 0.33
CBX4-204ENST00000495122 MICAL2O94851 1124 aa17.1■□□□□ 0.33
CBX4-204ENST00000495122 ITGB1P05556 798 aa17.1■□□□□ 0.33
CBX4-204ENST00000495122 DNAJB1P25685 340 aa17.1■□□□□ 0.33
CBX4-204ENST00000495122 LRPAP1P30533 357 aa17.1■□□□□ 0.33
CBX4-204ENST00000495122 COILP38432 576 aaPredicted RBP17.1■□□□□ 0.33
CBX4-204ENST00000495122 RAP1GAPP47736 663 aa17.1■□□□□ 0.33
CBX4-204ENST00000495122 HYAL1Q12794 435 aa17.1■□□□□ 0.33
CBX4-204ENST00000495122 CTC1Q2NKJ3 1217 aa17.1■□□□□ 0.33
CBX4-204ENST00000495122 SV2CQ496J9 727 aa17.1■□□□□ 0.33
CBX4-204ENST00000495122 ARHGAP17Q68EM7 881 aa17.1■□□□□ 0.33
CBX4-204ENST00000495122 SCARA3Q6AZY7 606 aa17.1■□□□□ 0.33
CBX4-204ENST00000495122 JAMLQ86YT9 394 aa17.1■□□□□ 0.33
CBX4-204ENST00000495122 ZDHHC17Q8IUH5 632 aa17.1■□□□□ 0.33
CBX4-204ENST00000495122 KLHL23Q8NBE8 558 aa17.1■□□□□ 0.33
CBX4-204ENST00000495122 MCRS1Q96EZ8 462 aa17.1■□□□□ 0.33
CBX4-204ENST00000495122 HEXIM2Q96MH2 286 aaKnown RBP17.1■□□□□ 0.33
CBX4-204ENST00000495122 FRMD8P1Q9BZ68 369 aaPredicted RBP17.1■□□□□ 0.33
CBX4-204ENST00000495122 NXF3Q9H4D5 531 aaKnown RBP17.1■□□□□ 0.33
CBX4-204ENST00000495122 SMIM28A0A1B0GU29 152 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 NDC80O14777 642 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 KRT7P08729 469 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 KRT3P12035 628 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 IBSPP21815 317 aaPredicted RBP17.09■□□□□ 0.33
CBX4-204ENST00000495122 LTBRP36941 435 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 SCNN1AP37088 669 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 PTGIRP43119 386 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 GPD2P43304 727 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 RAB27AP51159 221 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 NDST1P52848 882 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 CDH8P55286 799 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 FAM189BP81408 668 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 LMNB2Q03252 620 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 PDCLQ13371 301 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 HLTFQ14527 1009 aaKnown RBP eCLIP17.09■□□□□ 0.336e-7■□□□□ 8.6
CBX4-204ENST00000495122 SIX1Q15475 284 aaPredicted RBP17.09■□□□□ 0.33
CBX4-204ENST00000495122 PUS10Q3MIT2 529 aaKnown RBP17.09■□□□□ 0.33
CBX4-204ENST00000495122 PTPN20Q4JDL3 420 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 CFAP58Q5T655 872 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 CCDC137Q6PK04 289 aaKnown RBP17.09■□□□□ 0.33
CBX4-204ENST00000495122 LRIG3Q6UXM1 1119 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 LIMS2Q7Z4I7 341 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 SPPL3Q8TCT6 385 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 KHSRPQ92945 711 aaKnown RBP eCLIP17.09■□□□□ 0.33
CBX4-204ENST00000495122 MCEEQ96PE7 176 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 RUFY1Q96T51 708 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 TRAIPQ9BWF2 469 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 ELAC1Q9H777 363 aaKnown RBP17.09■□□□□ 0.33
CBX4-204ENST00000495122 SYNCQ9H7C4 482 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 CD320Q9NPF0 282 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 TMEM161AQ9NX61 479 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 CLDND1Q9NY35 253 aa17.09■□□□□ 0.33
CBX4-204ENST00000495122 DENND4AQ7Z401 1863 aa17.08■□□□□ 0.33
CBX4-204ENST00000495122 TBKBP1A7MCY6 615 aa17.08■□□□□ 0.32
CBX4-204ENST00000495122 GOLGA8KD6RF30 607 aa17.08■□□□□ 0.32
CBX4-204ENST00000495122 M0QYV0 167 aa17.08■□□□□ 0.32
CBX4-204ENST00000495122 CSPG5O95196 566 aa17.08■□□□□ 0.32
CBX4-204ENST00000495122 RARAP10276 462 aa17.08■□□□□ 0.32
CBX4-204ENST00000495122 DESP17661 470 aa17.08■□□□□ 0.32
CBX4-204ENST00000495122 TAF6P49848 677 aa17.08■□□□□ 0.32
CBX4-204ENST00000495122 PSMC1P62191 440 aaKnown RBP17.08■□□□□ 0.32
CBX4-204ENST00000495122 HADHQ16836 314 aaKnown RBP17.08■□□□□ 0.32
CBX4-204ENST00000495122 XYLT1Q86Y38 959 aa17.08■□□□□ 0.32
CBX4-204ENST00000495122 GSPT2Q8IYD1 628 aaKnown RBP17.08■□□□□ 0.32
CBX4-204ENST00000495122 TOP6BLQ8N6T0 577 aa17.08■□□□□ 0.32
CBX4-204ENST00000495122 ZMAT2Q96NC0 199 aaKnown RBP17.08■□□□□ 0.32
CBX4-204ENST00000495122 TWNKQ96RR1 684 aa17.08■□□□□ 0.32
CBX4-204ENST00000495122 SH3GL2Q99962 352 aa17.08■□□□□ 0.32
CBX4-204ENST00000495122 TSPYL1Q9H0U9 437 aa17.08■□□□□ 0.32
CBX4-204ENST00000495122 RNF19AQ9NV58 838 aa17.08■□□□□ 0.32
CBX4-204ENST00000495122 HCSTQ9UBK5 93 aa17.08■□□□□ 0.32
CBX4-204ENST00000495122 HESX1Q9UBX0 185 aa17.08■□□□□ 0.32
CBX4-204ENST00000495122 IPPQ9Y573 584 aa17.08■□□□□ 0.32
CBX4-204ENST00000495122 TRIOO75962 3097 aa17.07■□□□□ 0.32
CBX4-204ENST00000495122 TBX10O75333 385 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms