RNA–Protein interactions for RNA: ENST00000493601.5

PTPRU-208, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 5

Gene PTPRU, Length 695 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-208ENST00000493601 CLDN10P78369 228 aa17.68■□□□□ 0.42
PTPRU-208ENST00000493601 DNM1Q05193 864 aaKnown RBP17.68■□□□□ 0.42
PTPRU-208ENST00000493601 TAF10Q12962 218 aa17.68■□□□□ 0.42
PTPRU-208ENST00000493601 PSMD2Q13200 908 aa17.68■□□□□ 0.42
PTPRU-208ENST00000493601 DDX42Q86XP3 938 aaKnown RBP eCLIP17.68■□□□□ 0.42
PTPRU-208ENST00000493601 PDZD8Q8NEN9 1154 aa17.68■□□□□ 0.42
PTPRU-208ENST00000493601 TNIP3Q96KP6 325 aa17.68■□□□□ 0.42
PTPRU-208ENST00000493601 B3GNT5Q9BYG0 378 aa17.68■□□□□ 0.42
PTPRU-208ENST00000493601 LINC00597Q9H2U6 94 aa17.68■□□□□ 0.42
PTPRU-208ENST00000493601 SMYD3Q9H7B4 428 aa17.68■□□□□ 0.42
PTPRU-208ENST00000493601 DCDC2BA2VCK2 349 aa17.67■□□□□ 0.42
PTPRU-208ENST00000493601 SLC9A3R1O14745 358 aaPredicted RBP17.67■□□□□ 0.42
PTPRU-208ENST00000493601 AXIN1O15169 862 aa17.67■□□□□ 0.42
PTPRU-208ENST00000493601 ACTN4O43707 911 aaKnown RBP17.67■□□□□ 0.42
PTPRU-208ENST00000493601 RTN3O95197 1032 aaPredicted RBP17.67■□□□□ 0.42
PTPRU-208ENST00000493601 EPN2O95208 641 aa17.67■□□□□ 0.42
PTPRU-208ENST00000493601 OAS1P00973 400 aaKnown RBP17.67■□□□□ 0.42
PTPRU-208ENST00000493601 ZXDBP98169 803 aa17.67■□□□□ 0.42
PTPRU-208ENST00000493601 NCOA4Q13772 614 aa17.67■□□□□ 0.42
PTPRU-208ENST00000493601 PKP1Q13835 747 aa17.67■□□□□ 0.42
PTPRU-208ENST00000493601 DMC1Q14565 340 aa17.67■□□□□ 0.42
PTPRU-208ENST00000493601 ZNF667Q5HYK9 610 aa17.67■□□□□ 0.42
PTPRU-208ENST00000493601 KBTBD6Q86V97 674 aa17.67■□□□□ 0.42
PTPRU-208ENST00000493601 SLC9A9Q8IVB4 645 aa17.67■□□□□ 0.42
PTPRU-208ENST00000493601 NUP93Q8N1F7 819 aa17.67■□□□□ 0.42
PTPRU-208ENST00000493601 KIAA0895Q8NCT3 520 aa17.67■□□□□ 0.42
PTPRU-208ENST00000493601 PARD3BQ8TEW8 1205 aa17.67■□□□□ 0.42
PTPRU-208ENST00000493601 TMEM174Q8WUU8 243 aa17.67■□□□□ 0.42
PTPRU-208ENST00000493601 OVCA2Q8WZ82 227 aa17.67■□□□□ 0.42
PTPRU-208ENST00000493601 EZH1Q92800 747 aaPredicted RBP17.67■□□□□ 0.42
PTPRU-208ENST00000493601 PAGE5Q96GU1 130 aa17.67■□□□□ 0.42
PTPRU-208ENST00000493601 TMEM30AQ9NV96 361 aa17.67■□□□□ 0.42
PTPRU-208ENST00000493601 SMPD4Q9NXE4 827 aa17.67■□□□□ 0.42
PTPRU-208ENST00000493601 USP25Q9UHP3 1055 aa17.67■□□□□ 0.42
PTPRU-208ENST00000493601 SERTAD1Q9UHV2 236 aa17.67■□□□□ 0.42
PTPRU-208ENST00000493601 RCOR1Q9UKL0 485 aa17.67■□□□□ 0.42
PTPRU-208ENST00000493601 CPQQ9Y646 472 aa17.67■□□□□ 0.42
PTPRU-208ENST00000493601 LAMA1P25391 3075 aa17.67■□□□□ 0.42
PTPRU-208ENST00000493601 LRRIQ3A6PVS8 624 aaPredicted RBP17.66■□□□□ 0.42
PTPRU-208ENST00000493601 CLDN5O00501 218 aa17.66■□□□□ 0.42
PTPRU-208ENST00000493601 KLRC4O43908 158 aa17.66■□□□□ 0.42
PTPRU-208ENST00000493601 MYL1P05976 194 aa17.66■□□□□ 0.42
PTPRU-208ENST00000493601 P4HA1P13674 534 aa17.66■□□□□ 0.42
PTPRU-208ENST00000493601 YWHAQP27348 245 aa17.66■□□□□ 0.42
PTPRU-208ENST00000493601 IFRD2Q12894 506 aaPredicted RBP17.66■□□□□ 0.42
PTPRU-208ENST00000493601 STK4Q13043 487 aa17.66■□□□□ 0.42
PTPRU-208ENST00000493601 AASDHQ4L235 1098 aaPredicted RBP17.66■□□□□ 0.42
PTPRU-208ENST00000493601 SCARA5Q6ZMJ2 495 aa17.66■□□□□ 0.42
PTPRU-208ENST00000493601 FILIP1Q7Z7B0 1213 aa17.66■□□□□ 0.42
PTPRU-208ENST00000493601 FAM35AQ86V20 835 aa17.66■□□□□ 0.42
PTPRU-208ENST00000493601 C12orf50Q8NA57 414 aaPredicted RBP17.66■□□□□ 0.42
PTPRU-208ENST00000493601 PLEKHO2Q8TD55 490 aa17.66■□□□□ 0.42
PTPRU-208ENST00000493601 SMARCD1Q96GM5 515 aa17.66■□□□□ 0.42
PTPRU-208ENST00000493601 ZC3H10Q96K80 434 aaKnown RBP17.66■□□□□ 0.42
PTPRU-208ENST00000493601 MED10Q9BTT4 135 aa17.66■□□□□ 0.42
PTPRU-208ENST00000493601 RNF38Q9H0F5 515 aa17.66■□□□□ 0.42
PTPRU-208ENST00000493601 ARRDC1-AS1Q9H2J1 176 aa17.66■□□□□ 0.42
PTPRU-208ENST00000493601 DMAP1Q9NPF5 467 aaPredicted RBP17.66■□□□□ 0.42
PTPRU-208ENST00000493601 POLR3BQ9NW08 1133 aaPredicted RBP17.66■□□□□ 0.42
PTPRU-208ENST00000493601 DMAC2Q9NW81 257 aa17.66■□□□□ 0.42
PTPRU-208ENST00000493601 EBF1Q9UH73 591 aa17.66■□□□□ 0.42
PTPRU-208ENST00000493601 PCDHGA5Q9Y5G8 931 aa17.66■□□□□ 0.42
PTPRU-208ENST00000493601 SPTBN2O15020 2390 aa17.66■□□□□ 0.42
PTPRU-208ENST00000493601 CYP17A1P05093 508 aa17.65■□□□□ 0.42
PTPRU-208ENST00000493601 MBL2P11226 248 aaPredicted RBP17.65■□□□□ 0.42
PTPRU-208ENST00000493601 PFKFB1P16118 471 aa17.65■□□□□ 0.42
PTPRU-208ENST00000493601 OPRD1P41143 372 aa17.65■□□□□ 0.42
PTPRU-208ENST00000493601 CDH8P55286 799 aa17.65■□□□□ 0.42
PTPRU-208ENST00000493601 ELF2Q15723 593 aa17.65■□□□□ 0.42
PTPRU-208ENST00000493601 KMT5BQ4FZB7 885 aa17.65■□□□□ 0.42
PTPRU-208ENST00000493601 FBXO32Q969P5 355 aa17.65■□□□□ 0.42
PTPRU-208ENST00000493601 CFAP97Q9P2B7 532 aa17.65■□□□□ 0.42
PTPRU-208ENST00000493601 MYH10P35580 1976 aa17.64■□□□□ 0.41
PTPRU-208ENST00000493601 PDXKO00764 312 aa17.64■□□□□ 0.41
PTPRU-208ENST00000493601 GDF9O60383 454 aa17.64■□□□□ 0.41
PTPRU-208ENST00000493601 ADH1CP00326 375 aa17.64■□□□□ 0.41
PTPRU-208ENST00000493601 C4BPAP04003 597 aaKnown RBP17.64■□□□□ 0.41
PTPRU-208ENST00000493601 NR3C1P04150 777 aa17.64■□□□□ 0.41
PTPRU-208ENST00000493601 ZNF806P0C7X5 589 aa17.64■□□□□ 0.41
PTPRU-208ENST00000493601 CMA1P23946 247 aa17.64■□□□□ 0.41
PTPRU-208ENST00000493601 TUBP50607 506 aa17.64■□□□□ 0.41
PTPRU-208ENST00000493601 SGSM1Q2NKQ1 1148 aa17.64■□□□□ 0.41
PTPRU-208ENST00000493601 GAB4Q2WGN9 574 aa17.64■□□□□ 0.41
PTPRU-208ENST00000493601 TSTD1Q8NFU3 115 aa17.64■□□□□ 0.41
PTPRU-208ENST00000493601 USP33Q8TEY7 942 aa17.64■□□□□ 0.41
PTPRU-208ENST00000493601 DDX1Q92499 740 aaKnown RBP17.64■□□□□ 0.41
PTPRU-208ENST00000493601 KCNK16Q96T55 309 aa17.64■□□□□ 0.41
PTPRU-208ENST00000493601 KCTD10Q9H3F6 313 aa17.64■□□□□ 0.41
PTPRU-208ENST00000493601 KRT82Q9NSB4 513 aa17.64■□□□□ 0.41
PTPRU-208ENST00000493601 TBC1D14Q9P2M4 693 aa17.64■□□□□ 0.41
PTPRU-208ENST00000493601 K7EQS6 105 aa17.63■□□□□ 0.41
PTPRU-208ENST00000493601 VNN1O95497 513 aa17.63■□□□□ 0.41
PTPRU-208ENST00000493601 RPN1P04843 607 aaKnown RBP17.63■□□□□ 0.41
PTPRU-208ENST00000493601 MPLP40238 635 aa17.63■□□□□ 0.41
PTPRU-208ENST00000493601 EIF2DP41214 584 aaKnown RBP17.63■□□□□ 0.41
PTPRU-208ENST00000493601 LIMK1P53667 647 aa17.63■□□□□ 0.41
PTPRU-208ENST00000493601 SLC5A3P53794 718 aa17.63■□□□□ 0.41
PTPRU-208ENST00000493601 SEC13P55735 322 aa17.63■□□□□ 0.41
PTPRU-208ENST00000493601 DHCR24Q15392 516 aa17.63■□□□□ 0.41
PTPRU-208ENST00000493601 SF3A2Q15428 464 aaKnown RBP17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms