RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 GOLGA2P5Q9HBQ8 144 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 RRP15Q9Y3B9 282 aaKnown RBP22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 APOC4-APOC2K7ER74 178 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 PAPSS1O43252 624 aaPredicted RBP22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 FAM107AO95990 144 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 APOC2P02655 101 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 AKR1A1P14550 325 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 PECAM1P16284 738 aaPredicted RBP22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 PNPLA4P41247 253 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 GDF10P55107 478 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 CHADLQ6NUI6 762 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 TRPV1Q8NER1 839 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 CENPTQ96BT3 561 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 C10orf88Q9H8K7 445 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 ZFYVE28Q9HCC9 887 aa22.1■■□□□ 1.13
CCDC88B-208ENST00000492980 GMNCA6NCL1 334 aa22.09■■□□□ 1.13
CCDC88B-208ENST00000492980 CCDC130P13994 396 aa22.09■■□□□ 1.13
CCDC88B-208ENST00000492980 CHN1P15882 459 aa22.09■■□□□ 1.13
CCDC88B-208ENST00000492980 CTGFP29279 349 aa22.09■■□□□ 1.13
CCDC88B-208ENST00000492980 CDH6P55285 790 aa22.09■■□□□ 1.13
CCDC88B-208ENST00000492980 MMRN1Q13201 1228 aa22.09■■□□□ 1.13
CCDC88B-208ENST00000492980 LIMS2Q7Z4I7 341 aa22.09■■□□□ 1.13
CCDC88B-208ENST00000492980 FAM228AQ86W67 206 aa22.09■■□□□ 1.13
CCDC88B-208ENST00000492980 SCUBE3Q8IX30 993 aa22.09■■□□□ 1.13
CCDC88B-208ENST00000492980 CRYBG2Q8N1P7 616 aa22.09■■□□□ 1.13
CCDC88B-208ENST00000492980 SHOC2Q9UQ13 582 aa22.09■■□□□ 1.13
CCDC88B-208ENST00000492980 NDC80O14777 642 aa22.09■■□□□ 1.13
CCDC88B-208ENST00000492980 PRPSAP2O60256 369 aa22.09■■□□□ 1.13
CCDC88B-208ENST00000492980 SLC10A3P09131 477 aa22.09■■□□□ 1.13
CCDC88B-208ENST00000492980 PDGFRBP09619 1106 aa22.09■■□□□ 1.13
CCDC88B-208ENST00000492980 LMO2P25791 158 aa22.09■■□□□ 1.13
CCDC88B-208ENST00000492980 GNL1P36915 607 aaPredicted RBP22.09■■□□□ 1.13
CCDC88B-208ENST00000492980 TAF6P49848 677 aa22.09■■□□□ 1.13
CCDC88B-208ENST00000492980 ATP11AP98196 1134 aa22.09■■□□□ 1.13
CCDC88B-208ENST00000492980 ZNF618Q5T7W0 954 aa22.09■■□□□ 1.13
CCDC88B-208ENST00000492980 SAYSD1Q9NPB0 183 aa22.09■■□□□ 1.13
CCDC88B-208ENST00000492980 ABHD2P08910 425 aa22.08■■□□□ 1.13
CCDC88B-208ENST00000492980 CRHR2Q13324 411 aa22.08■■□□□ 1.13
CCDC88B-208ENST00000492980 DPYSL3Q14195 570 aa22.08■■□□□ 1.13
CCDC88B-208ENST00000492980 CCDC142Q17RM4 750 aa22.08■■□□□ 1.13
CCDC88B-208ENST00000492980 CCDC38Q502W7 563 aa22.08■■□□□ 1.13
CCDC88B-208ENST00000492980 ERMARDQ5T6L9 678 aa22.08■■□□□ 1.13
CCDC88B-208ENST00000492980 EXOC3L1Q86VI1 746 aa22.08■■□□□ 1.13
CCDC88B-208ENST00000492980 ZDHHC17Q8IUH5 632 aa22.08■■□□□ 1.13
CCDC88B-208ENST00000492980 PRCCQ92733 491 aaPredicted RBP22.08■■□□□ 1.13
CCDC88B-208ENST00000492980 XPO6Q96QU8 1125 aaKnown RBP22.08■■□□□ 1.13
CCDC88B-208ENST00000492980 B3GNT5Q9BYG0 378 aa22.08■■□□□ 1.13
CCDC88B-208ENST00000492980 CTNNAL1Q9UBT7 734 aa22.08■■□□□ 1.13
CCDC88B-208ENST00000492980 FARP1Q9Y4F1 1045 aaPredicted RBP22.08■■□□□ 1.13
CCDC88B-208ENST00000492980 DUSP11O75319 330 aaKnown RBP22.07■■□□□ 1.12
CCDC88B-208ENST00000492980 C6orf222P0C671 652 aaPredicted RBP22.07■■□□□ 1.12
CCDC88B-208ENST00000492980 ADORA2BP29275 332 aa22.07■■□□□ 1.12
CCDC88B-208ENST00000492980 SDC4P31431 198 aa22.07■■□□□ 1.12
CCDC88B-208ENST00000492980 SNX16P57768 344 aa22.07■■□□□ 1.12
CCDC88B-208ENST00000492980 INHBEP58166 350 aa22.07■■□□□ 1.12
CCDC88B-208ENST00000492980 EIF3EP60228 445 aaKnown RBP22.07■■□□□ 1.12
CCDC88B-208ENST00000492980 BST2Q10589 180 aaKnown RBP22.07■■□□□ 1.12
CCDC88B-208ENST00000492980 SV2CQ496J9 727 aa22.07■■□□□ 1.12
CCDC88B-208ENST00000492980 TAF2Q6P1X5 1199 aa22.07■■□□□ 1.12
CCDC88B-208ENST00000492980 TAOK1Q7L7X3 1001 aa22.07■■□□□ 1.12
CCDC88B-208ENST00000492980 ANKRD52Q8NB46 1076 aa22.07■■□□□ 1.12
CCDC88B-208ENST00000492980 APPL2Q8NEU8 664 aa22.07■■□□□ 1.12
CCDC88B-208ENST00000492980 FAM172AQ8WUF8 416 aa22.07■■□□□ 1.12
CCDC88B-208ENST00000492980 ATXN2LQ8WWM7 1075 aaKnown RBP22.07■■□□□ 1.12
CCDC88B-208ENST00000492980 SNX25Q9H3E2 840 aa22.07■■□□□ 1.12
CCDC88B-208ENST00000492980 DCAF8L1A6NGE4 600 aa22.07■■□□□ 1.12
CCDC88B-208ENST00000492980 BCAT1P54687 386 aa22.07■■□□□ 1.12
CCDC88B-208ENST00000492980 TWF2Q6IBS0 349 aaKnown RBP22.07■■□□□ 1.12
CCDC88B-208ENST00000492980 UNC45BQ8IWX7 931 aa22.07■■□□□ 1.12
CCDC88B-208ENST00000492980 RSAD2Q8WXG1 361 aa22.07■■□□□ 1.12
CCDC88B-208ENST00000492980 NGRNQ9NPE2 291 aaKnown RBP22.07■■□□□ 1.12
CCDC88B-208ENST00000492980 MCF2LO15068 1137 aa22.06■■□□□ 1.12
CCDC88B-208ENST00000492980 RPL22P35268 128 aaKnown RBP22.06■■□□□ 1.12
CCDC88B-208ENST00000492980 RPL34P49207 117 aaKnown RBP22.06■■□□□ 1.12
CCDC88B-208ENST00000492980 STAT4Q14765 748 aa22.06■■□□□ 1.12
CCDC88B-208ENST00000492980 CYP4F22Q6NT55 531 aa22.06■■□□□ 1.12
CCDC88B-208ENST00000492980 TEKT4Q8WW24 435 aa22.06■■□□□ 1.12
CCDC88B-208ENST00000492980 MAK16Q9BXY0 300 aaKnown RBP22.06■■□□□ 1.12
CCDC88B-208ENST00000492980 FAM107BQ9H098 131 aa22.06■■□□□ 1.12
CCDC88B-208ENST00000492980 LGALS13Q9UHV8 139 aa22.06■■□□□ 1.12
CCDC88B-208ENST00000492980 PCNTO95613 3336 aa22.06■■□□□ 1.12
CCDC88B-208ENST00000492980 PTGESO14684 152 aa22.06■■□□□ 1.12
CCDC88B-208ENST00000492980 CTCFP49711 727 aaPredicted RBP22.06■■□□□ 1.12
CCDC88B-208ENST00000492980 MRPS6P82932 125 aaKnown RBP22.06■■□□□ 1.12
CCDC88B-208ENST00000492980 NOMO1Q15155 1222 aa22.06■■□□□ 1.12
CCDC88B-208ENST00000492980 BOLA3Q53S33 107 aa22.06■■□□□ 1.12
CCDC88B-208ENST00000492980 SCYL2Q6P3W7 929 aa22.06■■□□□ 1.12
CCDC88B-208ENST00000492980 NPNTQ6UXI9 565 aa22.06■■□□□ 1.12
CCDC88B-208ENST00000492980 B4GALNT4Q76KP1 1039 aa22.06■■□□□ 1.12
CCDC88B-208ENST00000492980 PCGF5Q86SE9 256 aa22.06■■□□□ 1.12
CCDC88B-208ENST00000492980 ADGRF2Q8IZF7 708 aa22.06■■□□□ 1.12
CCDC88B-208ENST00000492980 SPATA18Q8TC71 538 aa22.06■■□□□ 1.12
CCDC88B-208ENST00000492980 CLEC4CQ8WTT0 213 aa22.06■■□□□ 1.12
CCDC88B-208ENST00000492980 ARHGEF2Q92974 986 aaKnown RBP22.06■■□□□ 1.12
CCDC88B-208ENST00000492980 KPNA6O60684 536 aa22.05■■□□□ 1.12
CCDC88B-208ENST00000492980 RBP3P10745 1247 aa22.05■■□□□ 1.12
CCDC88B-208ENST00000492980 ATP5DP30049 168 aa22.05■■□□□ 1.12
CCDC88B-208ENST00000492980 LILRA4P59901 499 aa22.05■■□□□ 1.12
CCDC88B-208ENST00000492980 TFDP2Q14188 446 aa22.05■■□□□ 1.12
CCDC88B-208ENST00000492980 KRT81Q14533 505 aa22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms