RNA–Protein interactions for RNA: ENST00000490751.1

LDB1-204, Transcript of LIM domain binding 1, humanhuman

TSL 2

Gene LDB1, Length 762 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-204ENST00000490751 IFNAR2P48551 515 aa33.29■■■□□ 2.92
LDB1-204ENST00000490751 CCR3P51677 355 aa33.29■■■□□ 2.92
LDB1-204ENST00000490751 MCCD1P59942 119 aaPredicted RBP33.29■■■□□ 2.92
LDB1-204ENST00000490751 KRT39Q6A163 491 aa33.29■■■□□ 2.92
LDB1-204ENST00000490751 Q6ZS52 159 aa33.29■■■□□ 2.92
LDB1-204ENST00000490751 ADSSL1Q8N142 457 aa33.29■■■□□ 2.92
LDB1-204ENST00000490751 NIF3L1Q9GZT8 377 aa33.29■■■□□ 2.92
LDB1-204ENST00000490751 FAM49BQ9NUQ9 324 aa33.29■■■□□ 2.92
LDB1-204ENST00000490751 DUS2Q9NX74 493 aaKnown RBP33.29■■■□□ 2.92
LDB1-204ENST00000490751 PCDHGA2Q9Y5H1 932 aa33.29■■■□□ 2.92
LDB1-204ENST00000490751 WNT6Q9Y6F9 365 aa33.29■■■□□ 2.92
LDB1-204ENST00000490751 KINO60870 393 aaKnown RBP33.28■■■□□ 2.92
LDB1-204ENST00000490751 TCF3P15923 654 aa33.28■■■□□ 2.92
LDB1-204ENST00000490751 INCA1Q0VD86 236 aa33.28■■■□□ 2.92
LDB1-204ENST00000490751 CCDC150Q8NCX0 1101 aa33.28■■■□□ 2.92
LDB1-204ENST00000490751 SLC2A14Q8TDB8 520 aa33.28■■■□□ 2.92
LDB1-204ENST00000490751 NELL1Q92832 810 aa33.28■■■□□ 2.92
LDB1-204ENST00000490751 FBXO32Q969P5 355 aa33.28■■■□□ 2.92
LDB1-204ENST00000490751 CHFRQ96EP1 664 aa33.28■■■□□ 2.92
LDB1-204ENST00000490751 CYP3A43Q9HB55 503 aa33.28■■■□□ 2.92
LDB1-204ENST00000490751 ZSCAN32Q9NX65 697 aa33.28■■■□□ 2.92
LDB1-204ENST00000490751 RIF1Q5UIP0 2472 aaKnown RBP33.27■■■□□ 2.92
LDB1-204ENST00000490751 FAM186AA6NE01 2351 aa33.27■■■□□ 2.92
LDB1-204ENST00000490751 MXI1P50539 228 aa33.27■■■□□ 2.92
LDB1-204ENST00000490751 PMS1P54277 932 aaKnown RBP33.27■■■□□ 2.92
LDB1-204ENST00000490751 CCINQ13939 588 aa33.27■■■□□ 2.92
LDB1-204ENST00000490751 SPEM1Q8N4L4 309 aa33.27■■■□□ 2.92
LDB1-204ENST00000490751 CPA6Q8N4T0 437 aa33.27■■■□□ 2.92
LDB1-204ENST00000490751 C12orf29Q8N999 325 aa33.27■■■□□ 2.92
LDB1-204ENST00000490751 ZBTB44Q8NCP5 570 aa33.27■■■□□ 2.92
LDB1-204ENST00000490751 ATRIPQ8WXE1 791 aa33.27■■■□□ 2.92
LDB1-204ENST00000490751 TWNKQ96RR1 684 aa33.27■■■□□ 2.92
LDB1-204ENST00000490751 GTPBP4Q9BZE4 634 aaKnown RBP33.27■■■□□ 2.92
LDB1-204ENST00000490751 TNFRSF10BO14763 440 aa33.26■■■□□ 2.91
LDB1-204ENST00000490751 TDGF1P13385 188 aa33.26■■■□□ 2.91
LDB1-204ENST00000490751 TRIM21P19474 475 aaKnown RBP33.26■■■□□ 2.91
LDB1-204ENST00000490751 SLC5A3P53794 718 aa33.26■■■□□ 2.91
LDB1-204ENST00000490751 ZXDBP98169 803 aa33.26■■■□□ 2.91
LDB1-204ENST00000490751 SATB1Q01826 763 aa33.26■■■□□ 2.91
LDB1-204ENST00000490751 PPP2R5DQ14738 602 aa33.26■■■□□ 2.91
LDB1-204ENST00000490751 ANKRD40Q6AI12 368 aa33.26■■■□□ 2.91
LDB1-204ENST00000490751 PDZD8Q8NEN9 1154 aa33.26■■■□□ 2.91
LDB1-204ENST00000490751 SCAMP5Q8TAC9 235 aa33.26■■■□□ 2.91
LDB1-204ENST00000490751 SMOQ99835 787 aa33.26■■■□□ 2.91
LDB1-204ENST00000490751 RNF38Q9H0F5 515 aa33.26■■■□□ 2.91
LDB1-204ENST00000490751 ECT2Q9H8V3 914 aa33.26■■■□□ 2.91
LDB1-204ENST00000490751 TRIM49BA6NDI0 452 aa33.25■■■□□ 2.91
LDB1-204ENST00000490751 STX10O60499 249 aa33.25■■■□□ 2.91
LDB1-204ENST00000490751 OLFM2O95897 454 aa33.25■■■□□ 2.91
LDB1-204ENST00000490751 OAS1P00973 400 aaKnown RBP33.25■■■□□ 2.91
LDB1-204ENST00000490751 CD58P19256 250 aa33.25■■■□□ 2.91
LDB1-204ENST00000490751 CXCL12P48061 93 aa33.25■■■□□ 2.91
LDB1-204ENST00000490751 SLC7A9P82251 487 aa33.25■■■□□ 2.91
LDB1-204ENST00000490751 FKBP3Q00688 224 aaKnown RBP33.25■■■□□ 2.91
LDB1-204ENST00000490751 AMPD2Q01433 879 aa33.25■■■□□ 2.91
LDB1-204ENST00000490751 EML3Q32P44 896 aa33.25■■■□□ 2.91
LDB1-204ENST00000490751 ZC3H3Q8IXZ2 948 aaKnown RBP33.25■■■□□ 2.91
LDB1-204ENST00000490751 ELOA2Q8IYF1 753 aaPredicted RBP33.25■■■□□ 2.91
LDB1-204ENST00000490751 ZMIZ2Q8NF64 920 aa33.25■■■□□ 2.91
LDB1-204ENST00000490751 OVCA2Q8WZ82 227 aa33.25■■■□□ 2.91
LDB1-204ENST00000490751 SEMA4DQ92854 862 aa33.25■■■□□ 2.91
LDB1-204ENST00000490751 ATP2A3Q93084 1043 aa33.25■■■□□ 2.91
LDB1-204ENST00000490751 NT5C1AQ9BXI3 368 aa33.25■■■□□ 2.91
LDB1-204ENST00000490751 FAM126AQ9BYI3 521 aaPredicted RBP33.25■■■□□ 2.91
LDB1-204ENST00000490751 LEFTY2O00292 366 aa33.24■■■□□ 2.91
LDB1-204ENST00000490751 SLC16A3O15427 465 aaKnown RBP33.24■■■□□ 2.91
LDB1-204ENST00000490751 BEST1O76090 585 aa33.24■■■□□ 2.91
LDB1-204ENST00000490751 ADORA2BP29275 332 aa33.24■■■□□ 2.91
LDB1-204ENST00000490751 TMEM196Q5HYL7 178 aa33.24■■■□□ 2.91
LDB1-204ENST00000490751 TCERG1LQ5VWI1 586 aa33.24■■■□□ 2.91
LDB1-204ENST00000490751 ISM2Q6H9L7 571 aa33.24■■■□□ 2.91
LDB1-204ENST00000490751 SYNPOQ8N3V7 929 aa33.24■■■□□ 2.91
LDB1-204ENST00000490751 FBXL13Q8NEE6 735 aa33.24■■■□□ 2.91
LDB1-204ENST00000490751 SMPD4Q9NXE4 827 aa33.24■■■□□ 2.91
LDB1-204ENST00000490751 CIZ1Q9ULV3 898 aaPredicted RBP33.24■■■□□ 2.91
LDB1-204ENST00000490751 CPQQ9Y646 472 aa33.24■■■□□ 2.91
LDB1-204ENST00000490751 PTPRZ1P23471 2315 aaPredicted RBP33.23■■■□□ 2.91
LDB1-204ENST00000490751 TRDMT1O14717 391 aaKnown RBP33.23■■■□□ 2.91
LDB1-204ENST00000490751 GADD45BO75293 160 aaPredicted RBP33.23■■■□□ 2.91
LDB1-204ENST00000490751 CILPO75339 1184 aa33.23■■■□□ 2.91
LDB1-204ENST00000490751 GJA4P35212 333 aa33.23■■■□□ 2.91
LDB1-204ENST00000490751 MAP3K7CLP57077 242 aa33.23■■■□□ 2.91
LDB1-204ENST00000490751 LRRC63Q05C16 580 aa33.23■■■□□ 2.91
LDB1-204ENST00000490751 DCAF17Q5H9S7 520 aaPredicted RBP33.23■■■□□ 2.91
LDB1-204ENST00000490751 FSTL4Q6MZW2 842 aa33.23■■■□□ 2.91
LDB1-204ENST00000490751 CSNK1G1Q9HCP0 422 aa33.23■■■□□ 2.91
LDB1-204ENST00000490751 COMMD8Q9NX08 183 aa33.23■■■□□ 2.91
LDB1-204ENST00000490751 IL37Q9NZH6 218 aa33.23■■■□□ 2.91
LDB1-204ENST00000490751 CHORDC1Q9UHD1 332 aaPredicted RBP33.23■■■□□ 2.91
LDB1-204ENST00000490751 MAN1B1Q9UKM7 699 aa33.23■■■□□ 2.91
LDB1-204ENST00000490751 MYO16Q9Y6X6 1858 aa33.22■■■□□ 2.91
LDB1-204ENST00000490751 LILRB5O75023 590 aa33.22■■■□□ 2.91
LDB1-204ENST00000490751 FAM200BP0CF97 657 aa33.22■■■□□ 2.91
LDB1-204ENST00000490751 GRSF1Q12849 480 aaKnown RBP eCLIP33.22■■■□□ 2.91
LDB1-204ENST00000490751 STIM1Q13586 685 aa33.22■■■□□ 2.91
LDB1-204ENST00000490751 WHAMMQ8TF30 809 aa33.22■■■□□ 2.91
LDB1-204ENST00000490751 HNRNPABQ99729 332 aaKnown RBP33.22■■■□□ 2.91
LDB1-204ENST00000490751 LINC00597Q9H2U6 94 aa33.22■■■□□ 2.91
LDB1-204ENST00000490751 RAB20Q9NX57 234 aa33.22■■■□□ 2.91
LDB1-204ENST00000490751 MBL2P11226 248 aaPredicted RBP33.21■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms