RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 HOXD11P31277 338 aaPredicted RBP22.44■■□□□ 1.18
LIME1-207ENST00000489212 SLC5A3P53794 718 aa22.44■■□□□ 1.18
LIME1-207ENST00000489212 MLLT6P55198 1093 aaPredicted RBP22.44■■□□□ 1.18
LIME1-207ENST00000489212 PAK1Q13153 545 aa22.44■■□□□ 1.18
LIME1-207ENST00000489212 ZNF77Q15935 545 aa22.44■■□□□ 1.18
LIME1-207ENST00000489212 CCDC40Q4G0X9 1142 aa22.44■■□□□ 1.18
LIME1-207ENST00000489212 TRIM68Q6AZZ1 485 aa22.44■■□□□ 1.18
LIME1-207ENST00000489212 TXNDC11Q6PKC3 985 aa22.44■■□□□ 1.18
LIME1-207ENST00000489212 TRIML1Q8N9V2 468 aa22.44■■□□□ 1.18
LIME1-207ENST00000489212 FAXDC2Q96IV6 333 aa22.44■■□□□ 1.18
LIME1-207ENST00000489212 HNRNPABQ99729 332 aaKnown RBP22.44■■□□□ 1.18
LIME1-207ENST00000489212 ZFHX2Q9C0A1 2572 aaPredicted RBP22.44■■□□□ 1.18
LIME1-207ENST00000489212 CSNK1G1Q9HCP0 422 aa22.44■■□□□ 1.18
LIME1-207ENST00000489212 HPS4Q9NQG7 708 aa22.44■■□□□ 1.18
LIME1-207ENST00000489212 THG1LQ9NWX6 298 aaKnown RBP22.44■■□□□ 1.18
LIME1-207ENST00000489212 IL37Q9NZH6 218 aa22.44■■□□□ 1.18
LIME1-207ENST00000489212 HELZP42694 1942 aaKnown RBP22.43■■□□□ 1.18
LIME1-207ENST00000489212 RTN3O95197 1032 aaPredicted RBP22.43■■□□□ 1.18
LIME1-207ENST00000489212 HDCP19113 662 aa22.43■■□□□ 1.18
LIME1-207ENST00000489212 KPNA1P52294 538 aaPredicted RBP22.43■■□□□ 1.18
LIME1-207ENST00000489212 MAP3K7CLP57077 242 aa22.43■■□□□ 1.18
LIME1-207ENST00000489212 ZXDBP98169 803 aa22.43■■□□□ 1.18
LIME1-207ENST00000489212 USP4Q13107 963 aa22.43■■□□□ 1.18
LIME1-207ENST00000489212 ZNF394Q53GI3 561 aa22.43■■□□□ 1.18
LIME1-207ENST00000489212 WDR44Q5JSH3 913 aa22.43■■□□□ 1.18
LIME1-207ENST00000489212 ALYREFQ86V81 257 aaKnown RBP22.43■■□□□ 1.18
LIME1-207ENST00000489212 C1orf210Q8IVY1 113 aa22.43■■□□□ 1.18
LIME1-207ENST00000489212 FBXO32Q969P5 355 aa22.43■■□□□ 1.18
LIME1-207ENST00000489212 CYFIP2Q96F07 1278 aa22.43■■□□□ 1.18
LIME1-207ENST00000489212 RNF38Q9H0F5 515 aa22.43■■□□□ 1.18
LIME1-207ENST00000489212 C8orf33Q9H7E9 229 aaPredicted RBP22.43■■□□□ 1.18
LIME1-207ENST00000489212 CISHQ9NSE2 258 aa22.43■■□□□ 1.18
LIME1-207ENST00000489212 PATJQ8NI35 1801 aa22.43■■□□□ 1.18
LIME1-207ENST00000489212 OTOL1A6NHN0 477 aaPredicted RBP22.42■■□□□ 1.18
LIME1-207ENST00000489212 SPECC1L-ADORA2AF8WAN1 911 aa22.42■■□□□ 1.18
LIME1-207ENST00000489212 CTHP32929 405 aa22.42■■□□□ 1.18
LIME1-207ENST00000489212 PPP3CCP48454 512 aa22.42■■□□□ 1.18
LIME1-207ENST00000489212 FMO5P49326 533 aa22.42■■□□□ 1.18
LIME1-207ENST00000489212 MTF1Q14872 753 aa22.42■■□□□ 1.18
LIME1-207ENST00000489212 CLEC17AQ6ZS10 378 aa22.42■■□□□ 1.18
LIME1-207ENST00000489212 CLEC20AQ6ZU45 233 aa22.42■■□□□ 1.18
LIME1-207ENST00000489212 MAML2Q8IZL2 1156 aaPredicted RBP22.42■■□□□ 1.18
LIME1-207ENST00000489212 SLITRK1Q96PX8 696 aa22.42■■□□□ 1.18
LIME1-207ENST00000489212 EBF3Q9H4W6 596 aa22.42■■□□□ 1.18
LIME1-207ENST00000489212 ARHGAP26Q9UNA1 814 aa22.42■■□□□ 1.18
LIME1-207ENST00000489212 FAM92AA1XBS5 289 aa22.41■■□□□ 1.18
LIME1-207ENST00000489212 OLFM2O95897 454 aa22.41■■□□□ 1.18
LIME1-207ENST00000489212 ABL1P00519 1130 aa22.41■■□□□ 1.18
LIME1-207ENST00000489212 OAS1P00973 400 aaKnown RBP22.41■■□□□ 1.18
LIME1-207ENST00000489212 FAM200BP0CF97 657 aa22.41■■□□□ 1.18
LIME1-207ENST00000489212 ARSAP15289 507 aa22.41■■□□□ 1.18
LIME1-207ENST00000489212 PFKLP17858 780 aa22.41■■□□□ 1.18
LIME1-207ENST00000489212 RPS9P46781 194 aaKnown RBP22.41■■□□□ 1.18
LIME1-207ENST00000489212 MRE11P49959 708 aa22.41■■□□□ 1.18
LIME1-207ENST00000489212 ITPRIPL2Q3MIP1 535 aa22.41■■□□□ 1.18
LIME1-207ENST00000489212 GPRIN1Q7Z2K8 1008 aa22.41■■□□□ 1.18
LIME1-207ENST00000489212 SLC4A11Q8NBS3 891 aa22.41■■□□□ 1.18
LIME1-207ENST00000489212 TTC16Q8NEE8 873 aa22.41■■□□□ 1.18
LIME1-207ENST00000489212 SH3RF2Q8TEC5 729 aa22.41■■□□□ 1.18
LIME1-207ENST00000489212 CHFRQ96EP1 664 aa22.41■■□□□ 1.18
LIME1-207ENST00000489212 MSANTD3Q96H12 275 aa22.41■■□□□ 1.18
LIME1-207ENST00000489212 MED15Q96RN5 788 aa22.41■■□□□ 1.18
LIME1-207ENST00000489212 CLSTN2Q9H4D0 955 aa22.41■■□□□ 1.18
LIME1-207ENST00000489212 CHORDC1Q9UHD1 332 aaPredicted RBP22.41■■□□□ 1.18
LIME1-207ENST00000489212 HHLA1C9JL84 531 aa22.4■■□□□ 1.18
LIME1-207ENST00000489212 NCAM2O15394 837 aa22.4■■□□□ 1.18
LIME1-207ENST00000489212 TCF3P15923 654 aa22.4■■□□□ 1.18
LIME1-207ENST00000489212 MAGEA9P43362 315 aa22.4■■□□□ 1.18
LIME1-207ENST00000489212 PGFP49763 221 aa22.4■■□□□ 1.18
LIME1-207ENST00000489212 RAD23BP54727 409 aa22.4■■□□□ 1.18
LIME1-207ENST00000489212 SLC7A9P82251 487 aa22.4■■□□□ 1.18
LIME1-207ENST00000489212 LRMPQ12912 555 aa22.4■■□□□ 1.18
LIME1-207ENST00000489212 CUL2Q13617 745 aa22.4■■□□□ 1.18
LIME1-207ENST00000489212 RUNX3Q13761 415 aa22.4■■□□□ 1.18
LIME1-207ENST00000489212 PPP1R26Q5T8A7 1209 aaPredicted RBP22.4■■□□□ 1.18
LIME1-207ENST00000489212 CC2D1AQ6P1N0 951 aaPredicted RBP22.4■■□□□ 1.18
LIME1-207ENST00000489212 RALGPS2Q86X27 583 aaPredicted RBP22.4■■□□□ 1.18
LIME1-207ENST00000489212 OVCA2Q8WZ82 227 aa22.4■■□□□ 1.18
LIME1-207ENST00000489212 SRRTQ9BXP5 876 aaKnown RBP22.4■■□□□ 1.18
LIME1-207ENST00000489212 LMAN1LQ9HAT1 526 aa22.4■■□□□ 1.18
LIME1-207ENST00000489212 SPATA6Q9NWH7 488 aaPredicted RBP22.4■■□□□ 1.18
LIME1-207ENST00000489212 COMMD8Q9NX08 183 aa22.4■■□□□ 1.18
LIME1-207ENST00000489212 GMIPQ9P107 970 aa22.4■■□□□ 1.18
LIME1-207ENST00000489212 WNT6Q9Y6F9 365 aa22.4■■□□□ 1.18
LIME1-207ENST00000489212 PMM2O15305 246 aa22.39■■□□□ 1.17
LIME1-207ENST00000489212 ZDHHC11BP0C7U3 371 aa22.39■■□□□ 1.17
LIME1-207ENST00000489212 CHRNB1P11230 501 aa22.39■■□□□ 1.17
LIME1-207ENST00000489212 TRIM21P19474 475 aaKnown RBP22.39■■□□□ 1.17
LIME1-207ENST00000489212 NBL1P41271 181 aa22.39■■□□□ 1.17
LIME1-207ENST00000489212 PDE6CP51160 858 aa22.39■■□□□ 1.17
LIME1-207ENST00000489212 TRIM59Q8IWR1 403 aa22.39■■□□□ 1.17
LIME1-207ENST00000489212 TTC39CQ8N584 583 aa22.39■■□□□ 1.17
LIME1-207ENST00000489212 PDZD8Q8NEN9 1154 aa22.39■■□□□ 1.17
LIME1-207ENST00000489212 OSCP1Q8WVF1 389 aa22.39■■□□□ 1.17
LIME1-207ENST00000489212 JAKMIP2Q96AA8 810 aa22.39■■□□□ 1.17
LIME1-207ENST00000489212 TMEM176AQ96HP8 235 aa22.39■■□□□ 1.17
LIME1-207ENST00000489212 HEXIM2Q96MH2 286 aaKnown RBP22.39■■□□□ 1.17
LIME1-207ENST00000489212 LMBRD1Q9NUN5 540 aa22.39■■□□□ 1.17
LIME1-207ENST00000489212 LEFTY2O00292 366 aa22.38■■□□□ 1.17
LIME1-207ENST00000489212 MARSP56192 900 aaKnown RBP22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms