RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 SYT15Q9BQS2 421 aa16.42■□□□□ 0.22
MCF2L-228ENST00000487354 CBWD1Q9BRT8 395 aa16.42■□□□□ 0.22
MCF2L-228ENST00000487354 NUSAP1Q9BXS6 441 aaKnown RBP16.42■□□□□ 0.22
MCF2L-228ENST00000487354 CAPN10Q9HC96 672 aa16.42■□□□□ 0.22
MCF2L-228ENST00000487354 PDE11AQ9HCR9 933 aa16.42■□□□□ 0.22
MCF2L-228ENST00000487354 RBAKQ9NYW8 714 aaPredicted RBP16.42■□□□□ 0.22
MCF2L-228ENST00000487354 CPQQ9Y646 472 aa16.42■□□□□ 0.22
MCF2L-228ENST00000487354 GCN1Q92616 2671 aaKnown RBP16.42■□□□□ 0.22
MCF2L-228ENST00000487354 GOLGA8IPA6NC78 632 aa16.41■□□□□ 0.22
MCF2L-228ENST00000487354 GOLGA8JA6NMD2 632 aa16.41■□□□□ 0.22
MCF2L-228ENST00000487354 BDNFP23560 247 aa16.41■□□□□ 0.22
MCF2L-228ENST00000487354 PCSK1P29120 753 aa16.41■□□□□ 0.22
MCF2L-228ENST00000487354 KDSRQ06136 332 aa16.41■□□□□ 0.22
MCF2L-228ENST00000487354 POSTNQ15063 836 aa16.41■□□□□ 0.22
MCF2L-228ENST00000487354 HSF5Q4G112 596 aaPredicted RBP16.41■□□□□ 0.22
MCF2L-228ENST00000487354 SPDYCQ5MJ68 293 aa16.41■□□□□ 0.22
MCF2L-228ENST00000487354 L1TD1Q5T7N2 865 aaKnown RBP16.41■□□□□ 0.22
MCF2L-228ENST00000487354 LYSMD4Q5XG99 296 aa16.41■□□□□ 0.22
MCF2L-228ENST00000487354 LMBRD2Q68DH5 695 aaPredicted RBP16.41■□□□□ 0.22
MCF2L-228ENST00000487354 VSTM1Q6UX27 236 aa16.41■□□□□ 0.22
MCF2L-228ENST00000487354 DENND5BQ6ZUT9 1274 aa16.41■□□□□ 0.22
MCF2L-228ENST00000487354 DYMQ7RTS9 669 aa16.41■□□□□ 0.22
MCF2L-228ENST00000487354 CSGALNACT2Q8N6G5 542 aa16.41■□□□□ 0.22
MCF2L-228ENST00000487354 OR2I1PQ8NGU4 316 aa16.41■□□□□ 0.22
MCF2L-228ENST00000487354 HMGB4Q8WW32 186 aa16.41■□□□□ 0.22
MCF2L-228ENST00000487354 ZFRQ96KR1 1074 aaKnown RBP16.41■□□□□ 0.22
MCF2L-228ENST00000487354 SPACA7Q96KW9 195 aa16.41■□□□□ 0.22
MCF2L-228ENST00000487354 PNKPQ96T60 521 aa16.41■□□□□ 0.22
MCF2L-228ENST00000487354 CD248Q9HCU0 757 aa16.41■□□□□ 0.22
MCF2L-228ENST00000487354 SMPD4Q9NXE4 827 aa16.41■□□□□ 0.22
MCF2L-228ENST00000487354 TCRBV21S2A2A0A5A6 115 aa16.4■□□□□ 0.22
MCF2L-228ENST00000487354 MYMKA6NI61 221 aa16.4■□□□□ 0.22
MCF2L-228ENST00000487354 ALDH1A2O94788 518 aa16.4■□□□□ 0.22
MCF2L-228ENST00000487354 CD59P13987 128 aa16.4■□□□□ 0.22
MCF2L-228ENST00000487354 HOXD12P35452 270 aa16.4■□□□□ 0.22
MCF2L-228ENST00000487354 DDIT3P35638 169 aa16.4■□□□□ 0.22
MCF2L-228ENST00000487354 LONP1P36776 959 aaKnown RBP16.4■□□□□ 0.22
MCF2L-228ENST00000487354 PDE6CP51160 858 aa16.4■□□□□ 0.22
MCF2L-228ENST00000487354 NOP14P78316 857 aaKnown RBP16.4■□□□□ 0.22
MCF2L-228ENST00000487354 RESTQ13127 1097 aa16.4■□□□□ 0.22
MCF2L-228ENST00000487354 C4orf50Q6ZRC1 276 aa16.4■□□□□ 0.22
MCF2L-228ENST00000487354 RAB44Q7Z6P3 723 aaPredicted RBP16.4■□□□□ 0.22
MCF2L-228ENST00000487354 PROSER1Q86XN7 944 aa16.4■□□□□ 0.22
MCF2L-228ENST00000487354 ETFBKMTQ8IXQ9 262 aa16.4■□□□□ 0.22
MCF2L-228ENST00000487354 OR5B17Q8NGF7 314 aa16.4■□□□□ 0.22
MCF2L-228ENST00000487354 PCED1BQ96HM7 432 aa16.4■□□□□ 0.22
MCF2L-228ENST00000487354 EPSTI1Q96J88 318 aa16.4■□□□□ 0.22
MCF2L-228ENST00000487354 CEP295NLQ96MC4 621 aa16.4■□□□□ 0.22
MCF2L-228ENST00000487354 SLC32A1Q9H598 525 aa16.4■□□□□ 0.22
MCF2L-228ENST00000487354 TRPM5Q9NZQ8 1165 aa16.4■□□□□ 0.22
MCF2L-228ENST00000487354 TBC1D7Q9P0N9 293 aa16.4■□□□□ 0.22
MCF2L-228ENST00000487354 MAGEC2Q9UBF1 373 aaPredicted RBP16.4■□□□□ 0.22
MCF2L-228ENST00000487354 CDH9Q9ULB4 789 aa16.4■□□□□ 0.22
MCF2L-228ENST00000487354 APODP05090 189 aa16.39■□□□□ 0.21
MCF2L-228ENST00000487354 KRT19P08727 400 aa16.39■□□□□ 0.21
MCF2L-228ENST00000487354 GABRG2P18507 467 aa16.39■□□□□ 0.21
MCF2L-228ENST00000487354 GARTP22102 1010 aa16.39■□□□□ 0.21
MCF2L-228ENST00000487354 RBP5P82980 135 aa16.39■□□□□ 0.21
MCF2L-228ENST00000487354 EOGTQ5NDL2 527 aa16.39■□□□□ 0.21
MCF2L-228ENST00000487354 MIB1Q86YT6 1006 aa16.39■□□□□ 0.21
MCF2L-228ENST00000487354 CHCHD4Q8N4Q1 142 aa16.39■□□□□ 0.21
MCF2L-228ENST00000487354 KRI1Q8N9T8 703 aaKnown RBP16.39■□□□□ 0.21
MCF2L-228ENST00000487354 CACTINQ8WUQ7 758 aaKnown RBP16.39■□□□□ 0.21
MCF2L-228ENST00000487354 POLMQ9NP87 494 aaPredicted RBP16.39■□□□□ 0.21
MCF2L-228ENST00000487354 ARHGEF4Q9NR80 690 aa16.39■□□□□ 0.21
MCF2L-228ENST00000487354 CFAP97Q9P2B7 532 aa16.39■□□□□ 0.21
MCF2L-228ENST00000487354 CIZ1Q9ULV3 898 aaPredicted RBP16.39■□□□□ 0.21
MCF2L-228ENST00000487354 GPSM3Q9Y4H4 160 aa16.39■□□□□ 0.21
MCF2L-228ENST00000487354 APC2O95996 2303 aa16.39■□□□□ 0.21
MCF2L-228ENST00000487354 FRMD3A2A2Y4 597 aa16.38■□□□□ 0.21
MCF2L-228ENST00000487354 F8VP50 259 aa16.38■□□□□ 0.21
MCF2L-228ENST00000487354 MAP3K13O43283 966 aa16.38■□□□□ 0.21
MCF2L-228ENST00000487354 GJB3O75712 270 aa16.38■□□□□ 0.21
MCF2L-228ENST00000487354 CD2BP2O95400 341 aaKnown RBP16.38■□□□□ 0.21
MCF2L-228ENST00000487354 CFIP05156 583 aa16.38■□□□□ 0.21
MCF2L-228ENST00000487354 SERPINF2P08697 491 aa16.38■□□□□ 0.21
MCF2L-228ENST00000487354 ADH5P11766 374 aa16.38■□□□□ 0.21
MCF2L-228ENST00000487354 WARSP23381 471 aaKnown RBP16.38■□□□□ 0.21
MCF2L-228ENST00000487354 GJB2P29033 226 aa16.38■□□□□ 0.21
MCF2L-228ENST00000487354 GRIK1P39086 918 aa16.38■□□□□ 0.21
MCF2L-228ENST00000487354 GRIA2P42262 883 aa16.38■□□□□ 0.21
MCF2L-228ENST00000487354 TNFRSF4P43489 277 aa16.38■□□□□ 0.21
MCF2L-228ENST00000487354 LY6G5CQ5SRR4 150 aa16.38■□□□□ 0.21
MCF2L-228ENST00000487354 DPH6Q7L8W6 267 aa16.38■□□□□ 0.21
MCF2L-228ENST00000487354 SLC41A1Q8IVJ1 513 aa16.38■□□□□ 0.21
MCF2L-228ENST00000487354 DEFB119Q8N690 84 aa16.38■□□□□ 0.21
MCF2L-228ENST00000487354 MYCBPAPQ8TBZ2 947 aa16.38■□□□□ 0.21
MCF2L-228ENST00000487354 WBP2Q969T9 261 aa16.38■□□□□ 0.21
MCF2L-228ENST00000487354 C8orf48Q96LL4 319 aa16.38■□□□□ 0.21
MCF2L-228ENST00000487354 ACCSQ96QU6 501 aa16.38■□□□□ 0.21
MCF2L-228ENST00000487354 MRPL44Q9H9J2 332 aaKnown RBP16.38■□□□□ 0.21
MCF2L-228ENST00000487354 INTS13Q9NVM9 706 aa16.38■□□□□ 0.21
MCF2L-228ENST00000487354 CALCOCO1Q9P1Z2 691 aa16.38■□□□□ 0.21
MCF2L-228ENST00000487354 BCCIPQ9P287 314 aaKnown RBP eCLIP16.38■□□□□ 0.21
MCF2L-228ENST00000487354 SEL1LQ9UBV2 794 aa16.38■□□□□ 0.21
MCF2L-228ENST00000487354 SLC6A14Q9UN76 642 aa16.38■□□□□ 0.21
MCF2L-228ENST00000487354 A0A1W2PQF6 199 aa16.37■□□□□ 0.21
MCF2L-228ENST00000487354 TRIM24O15164 1050 aa16.37■□□□□ 0.21
MCF2L-228ENST00000487354 DPP6P42658 865 aa16.37■□□□□ 0.21
MCF2L-228ENST00000487354 CYP27A1Q02318 531 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms