RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 DCAF12L1Q5VU92 463 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 ERP27Q96DN0 273 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 BORCS6Q96GS4 357 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 CPXM1Q96SM3 734 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 PCYOX1Q9UHG3 505 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 MROH7Q68CQ1 1323 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 TUBGCP6Q96RT7 1819 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 GHRP10912 638 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 AMPD1P23109 780 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 ARFIP2P53365 341 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 MFSD10Q14728 455 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 KATNAL2Q8IYT4 538 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 ARHGAP24Q8N264 748 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 KCNV2Q8TDN2 545 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 MICAL1Q8TDZ2 1067 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 PDCD6IPQ8WUM4 868 aaKnown RBP13.78□□□□□ -0.2
HMGN1-216ENST00000486741 C12orf42Q96LP6 360 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 SLITRK1Q96PX8 696 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 FAM111AQ96PZ2 611 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 GAD1Q99259 594 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 SPON2Q9BUD6 331 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 NXF3Q9H4D5 531 aaKnown RBP13.78□□□□□ -0.2
HMGN1-216ENST00000486741 UBN1Q9NPG3 1134 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 UBP1Q9NZI7 540 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 NAV1Q8NEY1 1877 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 LTBP4Q8N2S1 1624 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 ZFXP17010 805 aaPredicted RBP13.78□□□□□ -0.2
HMGN1-216ENST00000486741 BMPR2Q13873 1038 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 FAM117BQ6P1L5 589 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 MTHFD1LQ6UB35 978 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 TRPM8Q7Z2W7 1104 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 CRLF3Q8IUI8 442 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 NIFKQ9BYG3 293 aaKnown RBP13.78□□□□□ -0.2
HMGN1-216ENST00000486741 MINDY3Q9H8M7 445 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 TXLNGQ9NUQ3 528 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 SLC12A6Q9UHW9 1150 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 ITGA11Q9UKX5 1188 aa13.78□□□□□ -0.2
HMGN1-216ENST00000486741 TXNDC9O14530 226 aa13.77□□□□□ -0.2
HMGN1-216ENST00000486741 DNALI1O14645 258 aaPredicted RBP13.77□□□□□ -0.2
HMGN1-216ENST00000486741 FSCN2O14926 492 aa13.77□□□□□ -0.2
HMGN1-216ENST00000486741 MMP8P22894 467 aa13.77□□□□□ -0.2
HMGN1-216ENST00000486741 ATICP31939 592 aa13.77□□□□□ -0.2
HMGN1-216ENST00000486741 STIP1P31948 543 aaKnown RBP13.77□□□□□ -0.2
HMGN1-216ENST00000486741 EFHC1Q5JVL4 640 aa13.77□□□□□ -0.2
HMGN1-216ENST00000486741 SPATA2LQ8IUW3 424 aaPredicted RBP13.77□□□□□ -0.2
HMGN1-216ENST00000486741 C1orf127Q8N9H9 656 aa13.77□□□□□ -0.2
HMGN1-216ENST00000486741 ABI2Q9NYB9 513 aaPredicted RBP13.77□□□□□ -0.2
HMGN1-216ENST00000486741 NUDT5Q9UKK9 219 aa13.77□□□□□ -0.2
HMGN1-216ENST00000486741 ARL2BPQ9Y2Y0 163 aa13.77□□□□□ -0.2
HMGN1-216ENST00000486741 HMGCRP04035 888 aa13.77□□□□□ -0.21
HMGN1-216ENST00000486741 KDELR1P24390 212 aa13.77□□□□□ -0.21
HMGN1-216ENST00000486741 ELK3P41970 407 aa13.77□□□□□ -0.21
HMGN1-216ENST00000486741 GEMIN4P57678 1058 aaKnown RBP13.77□□□□□ -0.21
HMGN1-216ENST00000486741 POU5F1BQ06416 359 aa13.77□□□□□ -0.21
HMGN1-216ENST00000486741 ZNF268Q14587 947 aaPredicted RBP13.77□□□□□ -0.21
HMGN1-216ENST00000486741 SLFN11Q7Z7L1 901 aa13.77□□□□□ -0.21
HMGN1-216ENST00000486741 SMC1BQ8NDV3 1235 aa13.77□□□□□ -0.21
HMGN1-216ENST00000486741 GABPB2Q8TAK5 448 aaPredicted RBP13.77□□□□□ -0.21
HMGN1-216ENST00000486741 KRT82Q9NSB4 513 aa13.77□□□□□ -0.21
HMGN1-216ENST00000486741 TJP2Q9UDY2 1190 aa13.77□□□□□ -0.21
HMGN1-216ENST00000486741 DDX20Q9UHI6 824 aaKnown RBP13.77□□□□□ -0.21
HMGN1-216ENST00000486741 KPNA7A9QM74 516 aa13.77□□□□□ -0.21
HMGN1-216ENST00000486741 KCNK1O00180 336 aa13.77□□□□□ -0.21
HMGN1-216ENST00000486741 RGS2P41220 211 aa13.77□□□□□ -0.21
HMGN1-216ENST00000486741 PKN2Q16513 984 aaKnown RBP13.77□□□□□ -0.21
HMGN1-216ENST00000486741 ZC3H12AQ5D1E8 599 aaKnown RBP13.77□□□□□ -0.21
HMGN1-216ENST00000486741 TMEM63BQ5T3F8 832 aa13.77□□□□□ -0.21
HMGN1-216ENST00000486741 PHF13Q86YI8 300 aaPredicted RBP13.77□□□□□ -0.21
HMGN1-216ENST00000486741 NDUFAF2Q8N183 169 aa13.77□□□□□ -0.21
HMGN1-216ENST00000486741 CCNYL1Q8N7R7 359 aa13.77□□□□□ -0.21
HMGN1-216ENST00000486741 CCT6BQ92526 530 aa13.77□□□□□ -0.21
HMGN1-216ENST00000486741 MYH11P35749 1972 aa13.77□□□□□ -0.21
HMGN1-216ENST00000486741 GIPC1O14908 333 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 PPP1R12AO14974 1030 aaPredicted RBP13.76□□□□□ -0.21
HMGN1-216ENST00000486741 PPFIA2O75334 1257 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 BCAT1P54687 386 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 PCSK7Q16549 785 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 OR6P1Q8NGX9 317 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 RAET1EQ8TD07 263 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 PAFAH2Q99487 392 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 EPAS1Q99814 870 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 LRRC19Q9H756 370 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 DDX43Q9NXZ2 648 aaKnown RBP13.76□□□□□ -0.21
HMGN1-216ENST00000486741 LRP5O75197 1615 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 ATP8B3O60423 1300 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 PTPRJQ12913 1337 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.76□□□□□ -0.21
HMGN1-216ENST00000486741 CCT8L1PA6NM43 557 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 ATP4AP20648 1035 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 CYP2F1P24903 491 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 RBL1P28749 1068 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 TNFRSF8P28908 595 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 ASPHQ12797 758 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 MUM1Q2TAK8 710 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 ATG16L1Q676U5 607 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 FAM183BPQ6ZVS7 135 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 RASSF3Q86WH2 238 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 ARMC2Q8NEN0 867 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 FAM129AQ9BZQ8 928 aa13.76□□□□□ -0.21
HMGN1-216ENST00000486741 SLC24A3Q9HC58 644 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms