RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 SMPD4Q9NXE4 827 aa14.78□□□□□ -0.04
SQSTM1-208ENST00000485412 MAGEC2Q9UBF1 373 aaPredicted RBP14.78□□□□□ -0.04
SQSTM1-208ENST00000485412 ARHGAP26Q9UNA1 814 aa14.78□□□□□ -0.04
SQSTM1-208ENST00000485412 ZFYVE26Q68DK2 2539 aa14.78□□□□□ -0.04
SQSTM1-208ENST00000485412 CEP192Q8TEP8 1941 aa14.78□□□□□ -0.04
SQSTM1-208ENST00000485412 GON4LQ3T8J9 2241 aa14.77□□□□□ -0.04
SQSTM1-208ENST00000485412 ADAMTS9Q9P2N4 1935 aa14.77□□□□□ -0.04
SQSTM1-208ENST00000485412 PLXND1Q9Y4D7 1925 aa14.77□□□□□ -0.04
SQSTM1-208ENST00000485412 ZNF233A6NK53 670 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 SRRM3A6NNA2 597 aaPredicted RBP14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 F8VP50 259 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 K7EQS6 105 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 LEFTY2O00292 366 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 CLDN5O00501 218 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 MAP3K13O43283 966 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 TNNC2P02585 160 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 CYP17A1P05093 508 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 PDCP20941 246 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 WARSP23381 471 aaKnown RBP14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 GRIK1P39086 918 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 MAPK8P45983 427 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 ACAP1Q15027 740 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 TRIM61Q5EBN2 209 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 EPM2AIP1Q7L775 607 aaPredicted RBP14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 TRAPPC11Q7Z392 1133 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 RASSF3Q86WH2 238 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 C12orf40Q86WS4 652 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 CCDC65Q8IXS2 484 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 CCDC33Q8N5R6 958 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 MDGA1Q8NFP4 955 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 SPATA18Q8TC71 538 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 SPACA7Q96KW9 195 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 SPATA17Q96L03 361 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 MMS19Q96T76 1030 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 NUSAP1Q9BXS6 441 aaKnown RBP14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 TRIM9Q9C026 710 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 CDH9Q9ULB4 789 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 MMP17Q9ULZ9 603 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 ZZEF1O43149 2961 aa14.77□□□□□ -0.05
SQSTM1-208ENST00000485412 SPEGQ15772 3267 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 ZNF840PA6NDX5 716 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 CLIC2O15247 247 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 DLATP10515 647 aaKnown RBP14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 TCF3P15923 654 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 SLC6A11P48066 632 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 NASPP49321 788 aaPredicted RBP14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 PDE6CP51160 858 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 MYO1EQ12965 1108 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 DUOXA2Q1HG44 320 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 VSTM1Q6UX27 236 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 C4orf50Q6ZRC1 276 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 DENND5BQ6ZUT9 1274 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 ARMCX6Q7L4S7 300 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 LPCAT2Q7L5N7 544 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 DPH6Q7L8W6 267 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 FILIP1Q7Z7B0 1213 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 WDR49Q8IV35 697 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 NELFCDQ8IXH7 590 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 LINC00301Q8NCQ3 95 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 MYCBPAPQ8TBZ2 947 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 ZNF516Q92618 1163 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 CCDC127Q96BQ5 260 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 TTLL2Q9BWV7 592 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 ZNF518BQ9C0D4 1074 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 AGPAT3Q9NRZ7 376 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 KBTBD4Q9NVX7 518 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 BCCIPQ9P287 314 aaKnown RBP eCLIP14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 TFIP11Q9UBB9 837 aaKnown RBP14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 EVLQ9UI08 416 aaPredicted RBP14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 MORC2Q9Y6X9 1032 aaPredicted RBP14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 AKAP13Q12802 2813 aa14.76□□□□□ -0.05
SQSTM1-208ENST00000485412 PCNX2A6NKB5 2137 aa14.75□□□□□ -0.05
SQSTM1-208ENST00000485412 HYAL3O43820 417 aaPredicted RBP14.75□□□□□ -0.05
SQSTM1-208ENST00000485412 CASP4P49662 377 aa14.75□□□□□ -0.05
SQSTM1-208ENST00000485412 CYP2J2P51589 502 aa14.75□□□□□ -0.05
SQSTM1-208ENST00000485412 MRPS21P82921 87 aaKnown RBP14.75□□□□□ -0.05
SQSTM1-208ENST00000485412 IFRD2Q12894 506 aaPredicted RBP14.75□□□□□ -0.05
SQSTM1-208ENST00000485412 CRY1Q16526 586 aa14.75□□□□□ -0.05
SQSTM1-208ENST00000485412 SNRNP35Q16560 246 aaKnown RBP14.75□□□□□ -0.05
SQSTM1-208ENST00000485412 SHC4Q6S5L8 630 aa14.75□□□□□ -0.05
SQSTM1-208ENST00000485412 TMEM92Q6UXU6 159 aa14.75□□□□□ -0.05
SQSTM1-208ENST00000485412 FRMD1Q8N878 549 aa14.75□□□□□ -0.05
SQSTM1-208ENST00000485412 PLEKHO2Q8TD55 490 aa14.75□□□□□ -0.05
SQSTM1-208ENST00000485412 DHX58Q96C10 678 aa14.75□□□□□ -0.05
SQSTM1-208ENST00000485412 TNMDQ9H2S6 317 aa14.75□□□□□ -0.05
SQSTM1-208ENST00000485412 LHX6Q9UPM6 363 aa14.75□□□□□ -0.05
SQSTM1-208ENST00000485412 NEUROG3Q9Y4Z2 214 aa14.75□□□□□ -0.05
SQSTM1-208ENST00000485412 CPQQ9Y646 472 aa14.75□□□□□ -0.05
SQSTM1-208ENST00000485412 PKD1L2Q7Z442 2459 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 TNFRSF10BO14763 440 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 OLFM2O95897 454 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 ABL1P00519 1130 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 OAS1P00973 400 aaKnown RBP14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 MYL6P60660 151 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 ASIC1P78348 528 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 CYP24A1Q07973 514 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 EHHADHQ08426 723 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 TAF10Q12962 218 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 STK38Q15208 465 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms