RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 NIPA1Q7RTP0 329 aa5.91□□□□□ -1.46
PTPN4-210ENST00000485247 PIP4P1Q86T03 277 aa5.91□□□□□ -1.46
PTPN4-210ENST00000485247 ZNF843Q8N446 348 aa5.91□□□□□ -1.46
PTPN4-210ENST00000485247 CAMKK1Q8N5S9 505 aa5.91□□□□□ -1.46
PTPN4-210ENST00000485247 MFSD2AQ8NA29 543 aa5.91□□□□□ -1.46
PTPN4-210ENST00000485247 GSTCDQ8NEC7 633 aa5.91□□□□□ -1.46
PTPN4-210ENST00000485247 RSPRY1Q96DX4 576 aa5.91□□□□□ -1.46
PTPN4-210ENST00000485247 ZFYVE19Q96K21 471 aa5.91□□□□□ -1.46
PTPN4-210ENST00000485247 SLITRK6Q9H5Y7 841 aa5.91□□□□□ -1.46
PTPN4-210ENST00000485247 SNTG2Q9NY99 539 aa5.91□□□□□ -1.46
PTPN4-210ENST00000485247 CDY1Q9Y6F8 540 aa5.91□□□□□ -1.46
PTPN4-210ENST00000485247 TENM4Q6N022 2769 aa5.91□□□□□ -1.46
PTPN4-210ENST00000485247 SALL3Q9BXA9 1300 aa5.91□□□□□ -1.46
PTPN4-210ENST00000485247 EML5Q05BV3 1969 aa5.91□□□□□ -1.46
PTPN4-210ENST00000485247 PDCD11Q14690 1871 aaKnown RBP5.9□□□□□ -1.46
PTPN4-210ENST00000485247 SHROOM3Q8TF72 1996 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 IGLV3-22A0A075B6J6 115 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 PYCARD-AS1I3L0S3 204 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 PRRG1O14668 218 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 CHMP2AO43633 222 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 PGRP06401 933 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 MYL4P12829 197 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 ENGP17813 658 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 RXRAP19793 462 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 ELF1P32519 619 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 SREBF1P36956 1147 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 DHPSP49366 369 aaPredicted RBP5.9□□□□□ -1.46
PTPN4-210ENST00000485247 CLCN7P51798 805 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 DGKEP52429 567 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 PDE1AP54750 535 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 NAPAP54920 295 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 RPL6Q02878 288 aaKnown RBP5.9□□□□□ -1.46
PTPN4-210ENST00000485247 TNK2Q07912 1038 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 LMAN2Q12907 356 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 GRIK3Q13003 919 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 SEMA3BQ13214 749 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 SART3Q15020 963 aaKnown RBP5.9□□□□□ -1.46
PTPN4-210ENST00000485247 TEAD2Q15562 447 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 TSNAXIP1Q2TAA8 658 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 SFRP5Q5T4F7 317 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 C20orf194Q5TEA3 1177 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 PMS2CLQ68D20 193 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 OGFOD2Q6N063 350 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 BNC2Q6ZN30 1099 aaPredicted RBP5.9□□□□□ -1.46
PTPN4-210ENST00000485247 RTL10Q7L3V2 364 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 MRPL41Q8IXM3 137 aaKnown RBP5.9□□□□□ -1.46
PTPN4-210ENST00000485247 ZNF654Q8IZM8 581 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 PNPLA1Q8N8W4 532 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 PIP4K2CQ8TBX8 421 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 ASB11Q8WXH4 323 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 CPB2Q96IY4 423 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 RHOVQ96L33 236 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 CEP89Q96ST8 783 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 LZTS2Q9BRK4 669 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 DSCC1Q9BVC3 393 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 NUSAP1Q9BXS6 441 aaKnown RBP5.9□□□□□ -1.46
PTPN4-210ENST00000485247 NXF3Q9H4D5 531 aaKnown RBP5.9□□□□□ -1.46
PTPN4-210ENST00000485247 CLMPQ9H6B4 373 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 RIC8AQ9NPQ8 531 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 FSCN3Q9NQT6 498 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 SEMA3GQ9NS98 782 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 MBD1Q9UIS9 605 aaPredicted RBP5.9□□□□□ -1.46
PTPN4-210ENST00000485247 TPX2Q9ULW0 747 aaKnown RBP5.9□□□□□ -1.46
PTPN4-210ENST00000485247 GIT1Q9Y2X7 761 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 COL4A3BPQ9Y5P4 624 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 CORINQ9Y5Q5 1042 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 CAPN6Q9Y6Q1 641 aa5.9□□□□□ -1.46
PTPN4-210ENST00000485247 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.9□□□□□ -1.46
PTPN4-210ENST00000485247 HECTD1Q9ULT8 2610 aa5.9□□□□□ -1.47
PTPN4-210ENST00000485247 URB1O60287 2271 aaKnown RBP5.9□□□□□ -1.47
PTPN4-210ENST00000485247 ACACAQ13085 2346 aa5.9□□□□□ -1.47
PTPN4-210ENST00000485247 TDRD15B5MCY1 1934 aaKnown RBP5.89□□□□□ -1.47
PTPN4-210ENST00000485247 CELSR3Q9NYQ7 3312 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 NUP205Q92621 2012 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 ABCA7Q8IZY2 2146 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 ARHGEF37A1IGU5 675 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 FAM221AA4D161 298 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 MOSPD3O75425 235 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 ERLIN2O94905 339 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 CALM1P0DP23 149 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 CALM2P0DP24 149 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 CALM3P0DP25 149 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 BCKDHBP21953 392 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 ABCG1P45844 678 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 GNAQP50148 359 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 ADCY7P51828 1080 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 ATXN3P54252 364 aaPredicted RBP5.89□□□□□ -1.47
PTPN4-210ENST00000485247 CYP4F3Q08477 520 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 SPIRE1Q08AE8 756 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 FCHO2Q0JRZ9 810 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 IKZF1Q13422 519 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 TUSC3Q13454 348 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 PRR16Q569H4 304 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 JAKMIP3Q5VZ66 844 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 WWC2Q6AWC2 1192 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 IQCEQ6IPM2 695 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 NOTUMQ6P988 496 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 PDXDC1Q6P996 788 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 SRGAP1Q7Z6B7 1085 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 ATG4DQ86TL0 474 aaPredicted RBP5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms