RNA–Protein interactions for RNA: ENST00000483851.6

SHOX2-204, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SHOX2, Length 1,866 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-204ENST00000483851 MED10Q9BTT4 135 aa27.53■■■□□ 2
SHOX2-204ENST00000483851 B3GNT5Q9BYG0 378 aa27.53■■■□□ 2
SHOX2-204ENST00000483851 RASAL2Q9UJF2 1139 aa27.53■■■□□ 2
SHOX2-204ENST00000483851 FAN1Q9Y2M0 1017 aa27.53■■■□□ 2
SHOX2-204ENST00000483851 UTP11Q9Y3A2 253 aaKnown RBP27.53■■■□□ 2
SHOX2-204ENST00000483851 DDHD2O94830 711 aa27.52■■■□□ 2
SHOX2-204ENST00000483851 KRT1P04264 644 aa27.52■■■□□ 2
SHOX2-204ENST00000483851 RALAP11233 206 aa27.52■■■□□ 2
SHOX2-204ENST00000483851 BRCC3P46736 316 aa27.52■■■□□ 2
SHOX2-204ENST00000483851 NNTQ13423 1086 aa27.52■■■□□ 2
SHOX2-204ENST00000483851 FAM171BQ6P995 826 aa27.52■■■□□ 2
SHOX2-204ENST00000483851 ABI1Q8IZP0 508 aa27.52■■■□□ 2
SHOX2-204ENST00000483851 FEZ2Q9UHY8 353 aaPredicted RBP27.52■■■□□ 2
SHOX2-204ENST00000483851 TIMM13Q9Y5L4 95 aaPredicted RBP27.52■■■□□ 2
SHOX2-204ENST00000483851 TRAPPC3O43617 180 aa27.51■■□□□ 1.99
SHOX2-204ENST00000483851 TCF4P15884 667 aa27.51■■□□□ 1.99
SHOX2-204ENST00000483851 SDC4P31431 198 aa27.51■■□□□ 1.99
SHOX2-204ENST00000483851 FLT3P36888 993 aa27.51■■□□□ 1.99
SHOX2-204ENST00000483851 PTPN9P43378 593 aa27.51■■□□□ 1.99
SHOX2-204ENST00000483851 RNASELQ05823 741 aaKnown RBP27.51■■□□□ 1.99
SHOX2-204ENST00000483851 FAAP100Q0VG06 881 aa27.51■■□□□ 1.99
SHOX2-204ENST00000483851 HSP90B2PQ58FF3 399 aa27.51■■□□□ 1.99
SHOX2-204ENST00000483851 CCDC137Q6PK04 289 aaKnown RBP27.51■■□□□ 1.99
SHOX2-204ENST00000483851 CLEC20AQ6ZU45 233 aa27.51■■□□□ 1.99
SHOX2-204ENST00000483851 SND1Q7KZF4 910 aaKnown RBP eCLIP27.51■■□□□ 1.99
SHOX2-204ENST00000483851 ARMC5Q96C12 935 aa27.51■■□□□ 1.99
SHOX2-204ENST00000483851 PCED1BQ96HM7 432 aa27.51■■□□□ 1.99
SHOX2-204ENST00000483851 VPS18Q9P253 973 aa27.51■■□□□ 1.99
SHOX2-204ENST00000483851 TCRBV7S2A1N4TA0A589 114 aa27.51■■□□□ 1.99
SHOX2-204ENST00000483851 TJP3O95049 919 aa27.51■■□□□ 1.99
SHOX2-204ENST00000483851 COILP38432 576 aaPredicted RBP27.51■■□□□ 1.99
SHOX2-204ENST00000483851 PKN2Q16513 984 aaKnown RBP27.51■■□□□ 1.99
SHOX2-204ENST00000483851 TFDP3Q5H9I0 405 aa27.51■■□□□ 1.99
SHOX2-204ENST00000483851 INTS6LQ5JSJ4 861 aaKnown RBP27.51■■□□□ 1.99
SHOX2-204ENST00000483851 OVOS1Q6IE37 1185 aa27.51■■□□□ 1.99
SHOX2-204ENST00000483851 FAM35AQ86V20 835 aa27.51■■□□□ 1.99
SHOX2-204ENST00000483851 ZNF280BQ86YH2 543 aa27.51■■□□□ 1.99
SHOX2-204ENST00000483851 PIWIL1Q96J94 861 aaKnown RBP27.51■■□□□ 1.99
SHOX2-204ENST00000483851 RTP3Q9BQQ7 232 aa27.51■■□□□ 1.99
SHOX2-204ENST00000483851 USP18Q9UMW8 372 aa27.51■■□□□ 1.99
SHOX2-204ENST00000483851 MYBPHLA2RUH7 354 aa27.5■■□□□ 1.99
SHOX2-204ENST00000483851 PIK3R2O00459 728 aa27.5■■□□□ 1.99
SHOX2-204ENST00000483851 TTI1O43156 1089 aa27.5■■□□□ 1.99
SHOX2-204ENST00000483851 CAPN2P17655 700 aa27.5■■□□□ 1.99
SHOX2-204ENST00000483851 MIPP30301 263 aa27.5■■□□□ 1.99
SHOX2-204ENST00000483851 GJC1P36383 396 aa27.5■■□□□ 1.99
SHOX2-204ENST00000483851 DRG2P55039 364 aaKnown RBP27.5■■□□□ 1.99
SHOX2-204ENST00000483851 ZFYVE27Q5T4F4 411 aa27.5■■□□□ 1.99
SHOX2-204ENST00000483851 SPOCD1Q6ZMY3 1216 aa27.5■■□□□ 1.99
SHOX2-204ENST00000483851 SMARCD1Q96GM5 515 aa27.5■■□□□ 1.99
SHOX2-204ENST00000483851 FAM114A2Q9NRY5 505 aa27.5■■□□□ 1.99
SHOX2-204ENST00000483851 LRFN2Q9ULH4 789 aa27.5■■□□□ 1.99
SHOX2-204ENST00000483851 TTC3P53804 2025 aa27.5■■□□□ 1.99
SHOX2-204ENST00000483851 FBXO21O94952 628 aa27.49■■□□□ 1.99
SHOX2-204ENST00000483851 ATN1P54259 1190 aaPredicted RBP27.49■■□□□ 1.99
SHOX2-204ENST00000483851 TLE2Q04725 743 aa27.49■■□□□ 1.99
SHOX2-204ENST00000483851 CCNG2Q16589 344 aa27.49■■□□□ 1.99
SHOX2-204ENST00000483851 CCDC14Q49A88 953 aa27.49■■□□□ 1.99
SHOX2-204ENST00000483851 ATP13A4Q4VNC1 1196 aa27.49■■□□□ 1.99
SHOX2-204ENST00000483851 TRNP1Q6NT89 227 aa27.49■■□□□ 1.99
SHOX2-204ENST00000483851 CRIPAKQ8N1N5 446 aa27.49■■□□□ 1.99
SHOX2-204ENST00000483851 CMASQ8NFW8 434 aaPredicted RBP27.49■■□□□ 1.99
SHOX2-204ENST00000483851 CASKIN2Q8WXE0 1202 aa27.49■■□□□ 1.99
SHOX2-204ENST00000483851 RNF25Q96BH1 459 aaPredicted RBP27.49■■□□□ 1.99
SHOX2-204ENST00000483851 LRRC4Q9HBW1 653 aa27.49■■□□□ 1.99
SHOX2-204ENST00000483851 KRT82Q9NSB4 513 aa27.49■■□□□ 1.99
SHOX2-204ENST00000483851 CLDN5O00501 218 aa27.49■■□□□ 1.99
SHOX2-204ENST00000483851 TRUB2O95900 331 aaKnown RBP27.49■■□□□ 1.99
SHOX2-204ENST00000483851 LCP1P13796 627 aa27.49■■□□□ 1.99
SHOX2-204ENST00000483851 GBP1P32455 592 aa27.49■■□□□ 1.99
SHOX2-204ENST00000483851 PTGIRP43119 386 aa27.49■■□□□ 1.99
SHOX2-204ENST00000483851 TAZQ16635 292 aa27.49■■□□□ 1.99
SHOX2-204ENST00000483851 PAN2Q504Q3 1202 aaKnown RBP27.49■■□□□ 1.99
SHOX2-204ENST00000483851 TBCBQ99426 244 aa27.49■■□□□ 1.99
SHOX2-204ENST00000483851 PKMYT1Q99640 499 aa27.49■■□□□ 1.99
SHOX2-204ENST00000483851 ERP44Q9BS26 406 aa27.49■■□□□ 1.99
SHOX2-204ENST00000483851 MRPL9Q9BYD2 267 aaKnown RBP27.49■■□□□ 1.99
SHOX2-204ENST00000483851 CSNK1G1Q9HCP0 422 aa27.49■■□□□ 1.99
SHOX2-204ENST00000483851 I3L4J1 428 aa27.48■■□□□ 1.99
SHOX2-204ENST00000483851 HSF2BPO75031 334 aa27.48■■□□□ 1.99
SHOX2-204ENST00000483851 IL1R2P27930 398 aa27.48■■□□□ 1.99
SHOX2-204ENST00000483851 CDKN2BP42772 138 aa27.48■■□□□ 1.99
SHOX2-204ENST00000483851 CARSP49589 748 aaKnown RBP27.48■■□□□ 1.99
SHOX2-204ENST00000483851 TSPY1Q01534 308 aa27.48■■□□□ 1.99
SHOX2-204ENST00000483851 BOLA3Q53S33 107 aa27.48■■□□□ 1.99
SHOX2-204ENST00000483851 MFSD7Q6UXD7 560 aa27.48■■□□□ 1.99
SHOX2-204ENST00000483851 SYDE1Q6ZW31 735 aaPredicted RBP27.48■■□□□ 1.99
SHOX2-204ENST00000483851 JAMLQ86YT9 394 aa27.48■■□□□ 1.99
SHOX2-204ENST00000483851 LRRD1A4D1F6 860 aa27.47■■□□□ 1.99
SHOX2-204ENST00000483851 ZSCAN5CA6NGD5 496 aaPredicted RBP27.47■■□□□ 1.99
SHOX2-204ENST00000483851 AP1G2O75843 785 aa27.47■■□□□ 1.99
SHOX2-204ENST00000483851 GGCXP38435 758 aa27.47■■□□□ 1.99
SHOX2-204ENST00000483851 YWHAHQ04917 246 aaPredicted RBP27.47■■□□□ 1.99
SHOX2-204ENST00000483851 TRIM60Q495X7 471 aa27.47■■□□□ 1.99
SHOX2-204ENST00000483851 TXNRD3NBQ6F5E7 133 aa27.47■■□□□ 1.99
SHOX2-204ENST00000483851 GRK7Q8WTQ7 553 aa27.47■■□□□ 1.99
SHOX2-204ENST00000483851 TEKT4Q8WW24 435 aa27.47■■□□□ 1.99
SHOX2-204ENST00000483851 RAPGEF5Q92565 580 aa27.47■■□□□ 1.99
SHOX2-204ENST00000483851 CENPIQ92674 756 aaPredicted RBP27.47■■□□□ 1.99
SHOX2-204ENST00000483851 CASD1Q96PB1 797 aa27.47■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms