RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 GRIK1P39086 918 aa18.37■□□□□ 0.53
VIM-204ENST00000478746 SLC7A9P82251 487 aa18.37■□□□□ 0.53
VIM-204ENST00000478746 RPL6Q02878 288 aaKnown RBP18.37■□□□□ 0.53
VIM-204ENST00000478746 SCARA3Q6AZY7 606 aa18.37■□□□□ 0.53
VIM-204ENST00000478746 RHBDF2Q6PJF5 856 aa18.37■□□□□ 0.53
VIM-204ENST00000478746 SLC36A4Q6YBV0 504 aa18.37■□□□□ 0.53
VIM-204ENST00000478746 ZNF720Q7Z2F6 126 aa18.37■□□□□ 0.53
VIM-204ENST00000478746 RABEPKQ7Z6M1 372 aa18.37■□□□□ 0.53
VIM-204ENST00000478746 MINDY1Q8N5J2 469 aa18.37■□□□□ 0.53
VIM-204ENST00000478746 TOP6BLQ8N6T0 577 aa18.37■□□□□ 0.53
VIM-204ENST00000478746 RAD54LQ92698 747 aa18.37■□□□□ 0.53
VIM-204ENST00000478746 ZDHHC4Q9NPG8 344 aa18.37■□□□□ 0.53
VIM-204ENST00000478746 GPSM3Q9Y4H4 160 aa18.37■□□□□ 0.53
VIM-204ENST00000478746 EIF5BO60841 1220 aaKnown RBP18.36■□□□□ 0.53
VIM-204ENST00000478746 ATP2C2O75185 946 aa18.36■□□□□ 0.53
VIM-204ENST00000478746 ABL1P00519 1130 aa18.36■□□□□ 0.53
VIM-204ENST00000478746 CHRM1P11229 460 aaPredicted RBP18.36■□□□□ 0.53
VIM-204ENST00000478746 CD59P13987 128 aa18.36■□□□□ 0.53
VIM-204ENST00000478746 BDNFP23560 247 aa18.36■□□□□ 0.53
VIM-204ENST00000478746 PPP3CCP48454 512 aa18.36■□□□□ 0.53
VIM-204ENST00000478746 WNT7BP56706 349 aa18.36■□□□□ 0.53
VIM-204ENST00000478746 RBP5P82980 135 aa18.36■□□□□ 0.53
VIM-204ENST00000478746 SCAPQ12770 1279 aa18.36■□□□□ 0.53
VIM-204ENST00000478746 SOWAHAQ2M3V2 549 aa18.36■□□□□ 0.53
VIM-204ENST00000478746 VSTM1Q6UX27 236 aa18.36■□□□□ 0.53
VIM-204ENST00000478746 DENND5BQ6ZUT9 1274 aa18.36■□□□□ 0.53
VIM-204ENST00000478746 C12orf40Q86WS4 652 aa18.36■□□□□ 0.53
VIM-204ENST00000478746 RASSF8Q8NHQ8 419 aa18.36■□□□□ 0.53
VIM-204ENST00000478746 CEP192Q8TEP8 1941 aa18.36■□□□□ 0.53
VIM-204ENST00000478746 CEP295NLQ96MC4 621 aa18.36■□□□□ 0.53
VIM-204ENST00000478746 CAPN10Q9HC96 672 aa18.36■□□□□ 0.53
VIM-204ENST00000478746 SMPD4Q9NXE4 827 aa18.36■□□□□ 0.53
VIM-204ENST00000478746 EHD2Q9NZN4 543 aa18.36■□□□□ 0.53
VIM-204ENST00000478746 ITGA11Q9UKX5 1188 aa18.36■□□□□ 0.53
VIM-204ENST00000478746 CPQQ9Y646 472 aa18.36■□□□□ 0.53
VIM-204ENST00000478746 PLXND1Q9Y4D7 1925 aa18.35■□□□□ 0.53
VIM-204ENST00000478746 ZNF840PA6NDX5 716 aa18.35■□□□□ 0.53
VIM-204ENST00000478746 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.35■□□□□ 0.53
VIM-204ENST00000478746 ARHGAP33O14559 1287 aa18.35■□□□□ 0.53
VIM-204ENST00000478746 SCAMP3O14828 347 aaKnown RBP18.35■□□□□ 0.53
VIM-204ENST00000478746 ADH1CP00326 375 aa18.35■□□□□ 0.53
VIM-204ENST00000478746 SYPP08247 313 aa18.35■□□□□ 0.53
VIM-204ENST00000478746 ADH5P11766 374 aa18.35■□□□□ 0.53
VIM-204ENST00000478746 ANXA13P27216 316 aa18.35■□□□□ 0.53
VIM-204ENST00000478746 USP46P62068 366 aa18.35■□□□□ 0.53
VIM-204ENST00000478746 KDSRQ06136 332 aa18.35■□□□□ 0.53
VIM-204ENST00000478746 ZNF33AQ06730 810 aa18.35■□□□□ 0.53
VIM-204ENST00000478746 TRIP6Q15654 476 aaKnown RBP18.35■□□□□ 0.53
VIM-204ENST00000478746 SOWAHCQ53LP3 525 aaPredicted RBP18.35■□□□□ 0.53
VIM-204ENST00000478746 BRSK2Q8IWQ3 736 aa18.35■□□□□ 0.53
VIM-204ENST00000478746 KRI1Q8N9T8 703 aaKnown RBP18.35■□□□□ 0.53
VIM-204ENST00000478746 CXorf38Q8TB03 319 aa18.35■□□□□ 0.53
VIM-204ENST00000478746 HVCN1Q96D96 273 aa18.35■□□□□ 0.53
VIM-204ENST00000478746 SYT15Q9BQS2 421 aa18.35■□□□□ 0.53
VIM-204ENST00000478746 CFAP97Q9P2B7 532 aa18.35■□□□□ 0.53
VIM-204ENST00000478746 CDH9Q9ULB4 789 aa18.35■□□□□ 0.53
VIM-204ENST00000478746 R3HCC1Q9Y3T6 440 aaKnown RBP18.35■□□□□ 0.53
VIM-204ENST00000478746 PCDHB9Q9Y5E1 797 aa18.35■□□□□ 0.53
VIM-204ENST00000478746 TBC1D3BA6NDS4 549 aa18.34■□□□□ 0.53
VIM-204ENST00000478746 LDHAP00338 332 aaKnown RBP18.34■□□□□ 0.53
VIM-204ENST00000478746 LMO2P25791 158 aa18.34■□□□□ 0.53
VIM-204ENST00000478746 MAPRE1Q15691 268 aaKnown RBP18.34■□□□□ 0.53
VIM-204ENST00000478746 DPH6Q7L8W6 267 aa18.34■□□□□ 0.53
VIM-204ENST00000478746 PDZD3Q86UT5 571 aa18.34■□□□□ 0.53
VIM-204ENST00000478746 ZSWIM2Q8NEG5 633 aa18.34■□□□□ 0.53
VIM-204ENST00000478746 OR2I1PQ8NGU4 316 aa18.34■□□□□ 0.53
VIM-204ENST00000478746 MYLPFQ96A32 169 aa18.34■□□□□ 0.53
VIM-204ENST00000478746 SAAL1Q96ER3 474 aa18.34■□□□□ 0.53
VIM-204ENST00000478746 TTLL2Q9BWV7 592 aa18.34■□□□□ 0.53
VIM-204ENST00000478746 DNAAF2Q9NVR5 837 aaKnown RBP18.34■□□□□ 0.53
VIM-204ENST00000478746 RBAKQ9NYW8 714 aaPredicted RBP18.34■□□□□ 0.53
VIM-204ENST00000478746 TBC1D14Q9P2M4 693 aa18.34■□□□□ 0.53
VIM-204ENST00000478746 EXOC7Q9UPT5 735 aa18.34■□□□□ 0.53
VIM-204ENST00000478746 ZBTB24O43167 697 aaPredicted RBP18.33■□□□□ 0.52
VIM-204ENST00000478746 SH3BP5O60239 455 aa18.33■□□□□ 0.52
VIM-204ENST00000478746 PDGFRBP09619 1106 aa18.33■□□□□ 0.52
VIM-204ENST00000478746 DDIT3P35638 169 aa18.33■□□□□ 0.52
VIM-204ENST00000478746 PSMC1P62191 440 aaKnown RBP18.33■□□□□ 0.52
VIM-204ENST00000478746 CYP27A1Q02318 531 aa18.33■□□□□ 0.52
VIM-204ENST00000478746 SLC14A1Q13336 389 aa18.33■□□□□ 0.52
VIM-204ENST00000478746 LY6G5CQ5SRR4 150 aa18.33■□□□□ 0.52
VIM-204ENST00000478746 TRMT11Q7Z4G4 463 aaKnown RBP18.33■□□□□ 0.52
VIM-204ENST00000478746 SFR1Q86XK3 245 aa18.33■□□□□ 0.52
VIM-204ENST00000478746 DDX42Q86XP3 938 aaKnown RBP eCLIP18.33■□□□□ 0.52
VIM-204ENST00000478746 KCNV2Q8TDN2 545 aa18.33■□□□□ 0.52
VIM-204ENST00000478746 LARP4BQ92615 738 aaKnown RBP18.33■□□□□ 0.52
VIM-204ENST00000478746 FAM84AQ96KN4 292 aa18.33■□□□□ 0.52
VIM-204ENST00000478746 CAMK1GQ96NX5 476 aa18.33■□□□□ 0.52
VIM-204ENST00000478746 CCDC86Q9H6F5 360 aaKnown RBP18.33■□□□□ 0.52
VIM-204ENST00000478746 CRTAC1Q9NQ79 661 aa18.33■□□□□ 0.52
VIM-204ENST00000478746 SIX4Q9UIU6 781 aa18.33■□□□□ 0.52
VIM-204ENST00000478746 KIF3AQ9Y496 699 aa18.33■□□□□ 0.52
VIM-204ENST00000478746 LAMA5O15230 3695 aa18.33■□□□□ 0.52
VIM-204ENST00000478746 TRIM66O15016 1216 aa18.32■□□□□ 0.52
VIM-204ENST00000478746 OLFM2O95897 454 aa18.32■□□□□ 0.52
VIM-204ENST00000478746 MBL2P11226 248 aaPredicted RBP18.32■□□□□ 0.52
VIM-204ENST00000478746 GABRG2P18507 467 aa18.32■□□□□ 0.52
VIM-204ENST00000478746 NOP14P78316 857 aaKnown RBP18.32■□□□□ 0.52
VIM-204ENST00000478746 GAD2Q05329 585 aa18.32■□□□□ 0.52
VIM-204ENST00000478746 KCNA1Q09470 495 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms