RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 CD72P21854 359 aa16.49■□□□□ 0.23
HMGA1-206ENST00000478214 PPP3CCP48454 512 aa16.49■□□□□ 0.23
HMGA1-206ENST00000478214 PRKCQQ04759 706 aa16.49■□□□□ 0.23
HMGA1-206ENST00000478214 ZNF268Q14587 947 aaPredicted RBP16.49■□□□□ 0.23
HMGA1-206ENST00000478214 ARHGAP29Q52LW3 1261 aa16.49■□□□□ 0.23
HMGA1-206ENST00000478214 CT47A1Q5JQC4 288 aaPredicted RBP16.49■□□□□ 0.23
HMGA1-206ENST00000478214 CCDC183Q5T5S1 534 aa16.49■□□□□ 0.23
HMGA1-206ENST00000478214 ARHGAP17Q68EM7 881 aa16.49■□□□□ 0.23
HMGA1-206ENST00000478214 PHLDB3Q6NSJ2 640 aa16.49■□□□□ 0.23
HMGA1-206ENST00000478214 TPRG1Q6ZUI0 275 aa16.49■□□□□ 0.23
HMGA1-206ENST00000478214 GPRIN1Q7Z2K8 1008 aa16.49■□□□□ 0.23
HMGA1-206ENST00000478214 CRACR2AQ9BSW2 395 aa16.49■□□□□ 0.23
HMGA1-206ENST00000478214 DDX23Q9BUQ8 820 aaKnown RBP16.49■□□□□ 0.23
HMGA1-206ENST00000478214 DUSP16Q9BY84 665 aa16.49■□□□□ 0.23
HMGA1-206ENST00000478214 KIF9Q9HAQ2 790 aa16.49■□□□□ 0.23
HMGA1-206ENST00000478214 TRPV5Q9NQA5 729 aa16.49■□□□□ 0.23
HMGA1-206ENST00000478214 MUC6Q6W4X9 2439 aa16.49■□□□□ 0.23
HMGA1-206ENST00000478214 COL4A3Q01955 1670 aa16.49■□□□□ 0.23
HMGA1-206ENST00000478214 FAM92AA1XBS5 289 aa16.48■□□□□ 0.23
HMGA1-206ENST00000478214 SHISA7A6NL88 538 aa16.48■□□□□ 0.23
HMGA1-206ENST00000478214 CD19P15391 556 aa16.48■□□□□ 0.23
HMGA1-206ENST00000478214 TMEM270Q6UE05 265 aa16.48■□□□□ 0.23
HMGA1-206ENST00000478214 TTC16Q8NEE8 873 aa16.48■□□□□ 0.23
HMGA1-206ENST00000478214 PDZD8Q8NEN9 1154 aa16.48■□□□□ 0.23
HMGA1-206ENST00000478214 KREMEN1Q96MU8 473 aa16.48■□□□□ 0.23
HMGA1-206ENST00000478214 RNF38Q9H0F5 515 aa16.48■□□□□ 0.23
HMGA1-206ENST00000478214 SAMSN1Q9NSI8 373 aaKnown RBP16.48■□□□□ 0.23
HMGA1-206ENST00000478214 THG1LQ9NWX6 298 aaKnown RBP16.48■□□□□ 0.23
HMGA1-206ENST00000478214 COMMD8Q9NX08 183 aa16.48■□□□□ 0.23
HMGA1-206ENST00000478214 GMIPQ9P107 970 aa16.48■□□□□ 0.23
HMGA1-206ENST00000478214 PCDHB4Q9Y5E5 795 aa16.48■□□□□ 0.23
HMGA1-206ENST00000478214 GREB1Q4ZG55 1949 aa16.48■□□□□ 0.23
HMGA1-206ENST00000478214 WDFY4Q6ZS81 3184 aa16.47■□□□□ 0.23
HMGA1-206ENST00000478214 KANSL1LA0AUZ9 987 aa16.47■□□□□ 0.23
HMGA1-206ENST00000478214 OAS1P00973 400 aaKnown RBP16.47■□□□□ 0.23
HMGA1-206ENST00000478214 PFKLP17858 780 aa16.47■□□□□ 0.23
HMGA1-206ENST00000478214 PGFP49763 221 aa16.47■□□□□ 0.23
HMGA1-206ENST00000478214 GCNT1Q02742 428 aa16.47■□□□□ 0.23
HMGA1-206ENST00000478214 TNK2Q07912 1038 aa16.47■□□□□ 0.23
HMGA1-206ENST00000478214 GOLGA7BQ2TAP0 167 aa16.47■□□□□ 0.23
HMGA1-206ENST00000478214 SGO2Q562F6 1265 aa16.47■□□□□ 0.23
HMGA1-206ENST00000478214 SASS6Q6UVJ0 657 aa16.47■□□□□ 0.23
HMGA1-206ENST00000478214 TTC30AQ86WT1 665 aa16.47■□□□□ 0.23
HMGA1-206ENST00000478214 FAM114A1Q8IWE2 563 aa16.47■□□□□ 0.23
HMGA1-206ENST00000478214 TTC8Q8TAM2 541 aa16.47■□□□□ 0.23
HMGA1-206ENST00000478214 CSGALNACT1Q8TDX6 532 aa16.47■□□□□ 0.23
HMGA1-206ENST00000478214 SH3RF2Q8TEC5 729 aa16.47■□□□□ 0.23
HMGA1-206ENST00000478214 OVCA2Q8WZ82 227 aa16.47■□□□□ 0.23
HMGA1-206ENST00000478214 FBXO44Q9H4M3 255 aa16.47■□□□□ 0.23
HMGA1-206ENST00000478214 GKN1Q9NS71 199 aa16.47■□□□□ 0.23
HMGA1-206ENST00000478214 GTSE1Q9NYZ3 720 aa16.47■□□□□ 0.23
HMGA1-206ENST00000478214 TMEM63CQ9P1W3 806 aa16.47■□□□□ 0.23
HMGA1-206ENST00000478214 ARHGAP26Q9UNA1 814 aa16.47■□□□□ 0.23
HMGA1-206ENST00000478214 MTF2Q9Y483 593 aaPredicted RBP16.47■□□□□ 0.23
HMGA1-206ENST00000478214 PIAS3Q9Y6X2 628 aa16.47■□□□□ 0.23
HMGA1-206ENST00000478214 F5P12259 2224 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 OBSL1O75147 1896 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 NUP210Q8TEM1 1887 aaPredicted RBP16.46■□□□□ 0.23
HMGA1-206ENST00000478214 RNF225M0QZC1 329 aaPredicted RBP16.46■□□□□ 0.23
HMGA1-206ENST00000478214 OLFM2O95897 454 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 CALCAP01258 141 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 DCNP07585 359 aaKnown RBP16.46■□□□□ 0.23
HMGA1-206ENST00000478214 ZDHHC11BP0C7U3 371 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 SLC9A1P19634 815 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 PDE6CP51160 858 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 ZXDBP98169 803 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 PLCB2Q00722 1185 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 APBA1Q02410 837 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 USP4Q13107 963 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 UBXN2BQ14CS0 331 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 ZNF77Q15935 545 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 MAN2A1Q16706 1144 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 GJB7Q6PEY0 223 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 ZNF852Q6ZMS4 543 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 GBP6Q6ZN66 633 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 C11orf57Q6ZUT1 292 aaPredicted RBP16.46■□□□□ 0.23
HMGA1-206ENST00000478214 ANKRD52Q8NB46 1076 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 PRSS33Q8NF86 280 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 PJA1Q8NG27 643 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 ENOX1Q8TC92 643 aaKnown RBP16.46■□□□□ 0.23
HMGA1-206ENST00000478214 FAM83CQ9BQN1 747 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 TUBGCP2Q9BSJ2 902 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 PNPLA8Q9NP80 782 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 LTB4R2Q9NPC1 389 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 UBE2TQ9NPD8 197 aaPredicted RBP16.46■□□□□ 0.23
HMGA1-206ENST00000478214 SMPD4Q9NXE4 827 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 TSPAN16Q9UKR8 245 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 SIT1Q9Y3P8 196 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 NFE2L3Q9Y4A8 694 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 DENND4CQ5VZ89 1909 aa16.46■□□□□ 0.23
HMGA1-206ENST00000478214 FAM170BA6NMN3 283 aa16.45■□□□□ 0.22
HMGA1-206ENST00000478214 KCNJ18B7U540 433 aa16.45■□□□□ 0.22
HMGA1-206ENST00000478214 O00370 1275 aa16.45■□□□□ 0.22
HMGA1-206ENST00000478214 CYP26A1O43174 497 aa16.45■□□□□ 0.22
HMGA1-206ENST00000478214 PAEPP09466 180 aa16.45■□□□□ 0.22
HMGA1-206ENST00000478214 VDRP11473 427 aa16.45■□□□□ 0.22
HMGA1-206ENST00000478214 PRKCSHP14314 528 aaPredicted RBP16.45■□□□□ 0.22
HMGA1-206ENST00000478214 GLULP15104 373 aa16.45■□□□□ 0.22
HMGA1-206ENST00000478214 TARSP26639 723 aaKnown RBP16.45■□□□□ 0.22
HMGA1-206ENST00000478214 SOX9P48436 509 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms