RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.21■□□□□ 0.03
HDAC6-220ENST00000477528 SMYD3Q9H7B4 428 aa15.21■□□□□ 0.03
HDAC6-220ENST00000477528 SP110Q9HB58 689 aa15.21■□□□□ 0.03
HDAC6-220ENST00000477528 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.21■□□□□ 0.03
HDAC6-220ENST00000477528 GGA2Q9UJY4 613 aa15.21■□□□□ 0.03
HDAC6-220ENST00000477528 AJAP1Q9UKB5 411 aaPredicted RBP15.21■□□□□ 0.03
HDAC6-220ENST00000477528 TM9SF1O15321 606 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 NCAM1P13591 858 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 FLT3P36888 993 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 YTHDF3Q7Z739 585 aaKnown RBP15.2■□□□□ 0.02
HDAC6-220ENST00000477528 MTBPQ96DY7 904 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 IFT43Q96FT9 208 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 SNTG2Q9NY99 539 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 IRF6O14896 467 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 FARP2O94887 1054 aaPredicted RBP15.2■□□□□ 0.02
HDAC6-220ENST00000477528 LGALS2P05162 132 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 NQO1P15559 274 aaKnown RBP15.2■□□□□ 0.02
HDAC6-220ENST00000477528 KDELR1P24390 212 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 GRIK1P39086 918 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 ALDH18A1P54886 795 aaKnown RBP15.2■□□□□ 0.02
HDAC6-220ENST00000477528 ENPEPQ07075 957 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 SLC27A1Q6PCB7 646 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 ADGRF2Q8IZF7 708 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 ARMC2Q8NEN0 867 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 PPHLN1Q8NEY8 458 aaKnown RBP15.2■□□□□ 0.02
HDAC6-220ENST00000477528 TRPM4Q8TD43 1214 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 EFHD1Q9BUP0 239 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 SETD4Q9NVD3 440 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 MARCOQ9UEW3 520 aaPredicted RBP15.2■□□□□ 0.02
HDAC6-220ENST00000477528 PMM2O15305 246 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 ENO1P06733 434 aaKnown RBP15.2■□□□□ 0.02
HDAC6-220ENST00000477528 AP2B1P63010 937 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 ATPAF2Q8N5M1 289 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 OSMRQ99650 979 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 GTSE1Q9NYZ3 720 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 NOCTQ9UK39 431 aaKnown RBP15.2■□□□□ 0.02
HDAC6-220ENST00000477528 EPHB1P54762 984 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 PPIL2Q13356 520 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 TRIM67Q6ZTA4 783 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 NLRP9Q7RTR0 991 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 FAM84AQ96KN4 292 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 NTPCRQ9BSD7 190 aaKnown RBP15.2■□□□□ 0.02
HDAC6-220ENST00000477528 CDT1Q9H211 546 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 NOD2Q9HC29 1040 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 MYH13Q9UKX3 1938 aa15.2■□□□□ 0.02
HDAC6-220ENST00000477528 MTA2O94776 668 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 UBOX5O94941 541 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 ADORA2AP29274 412 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 RFC1P35251 1148 aaPredicted RBP15.19■□□□□ 0.02
HDAC6-220ENST00000477528 SH3BGRP55822 239 aaPredicted RBP15.19■□□□□ 0.02
HDAC6-220ENST00000477528 KDSRQ06136 332 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 CNGA2Q16280 664 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 HIPK4Q8NE63 616 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 TTC1Q99614 292 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 NAT9Q9BTE0 207 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 ITGB4P16144 1822 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 MROH7Q68CQ1 1323 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 ZNF862O60290 1169 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 C4BPAP04003 597 aaKnown RBP15.19■□□□□ 0.02
HDAC6-220ENST00000477528 CHI3L2Q15782 390 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 DNAL1Q4LDG9 190 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 RASIP1Q5U651 963 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 DENND5BQ6ZUT9 1274 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 RXFP1Q9HBX9 757 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.19■□□□□ 0.02
HDAC6-220ENST00000477528 CASQ2O14958 399 aaPredicted RBP15.19■□□□□ 0.02
HDAC6-220ENST00000477528 CYP2F1P24903 491 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 TAS2R40P59535 323 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 RPL7AP62424 266 aaKnown RBP15.19■□□□□ 0.02
HDAC6-220ENST00000477528 POU5F1BQ06416 359 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 ATP13A4Q4VNC1 1196 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 NSMCE4AQ9NXX6 385 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 RPTORQ8N122 1335 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 SDR42E2A6NKP2 422 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 PDHXO00330 501 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 ZSCAN5DPP0CG00 497 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 ELK3P41970 407 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 ANKRD20A4Q4UJ75 823 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 ANKRD20A2Q5SQ80 823 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 ANKRD20A1Q5TYW2 823 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 POLNQ7Z5Q5 900 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 ALLCQ8N6M5 410 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 NSL1Q96IY1 281 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 PPP1R2P1Q96PQ5 205 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 STXBP5LQ9Y2K9 1186 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 COQ4Q9Y3A0 265 aa15.19■□□□□ 0.02
HDAC6-220ENST00000477528 LAMA4Q16363 1823 aa15.18■□□□□ 0.02
HDAC6-220ENST00000477528 CYB561D2O14569 222 aa15.18■□□□□ 0.02
HDAC6-220ENST00000477528 HOXD13P35453 343 aa15.18■□□□□ 0.02
HDAC6-220ENST00000477528 ZNF280AP59817 542 aaPredicted RBP15.18■□□□□ 0.02
HDAC6-220ENST00000477528 PRAMEP78395 509 aa15.18■□□□□ 0.02
HDAC6-220ENST00000477528 OVGP1Q12889 678 aa15.18■□□□□ 0.02
HDAC6-220ENST00000477528 GNASQ5JWF2 1037 aa15.18■□□□□ 0.02
HDAC6-220ENST00000477528 FAM131BQ86XD5 332 aa15.18■□□□□ 0.02
HDAC6-220ENST00000477528 COPS5Q92905 334 aa15.18■□□□□ 0.02
HDAC6-220ENST00000477528 ZNF669Q96BR6 464 aaPredicted RBP15.18■□□□□ 0.02
HDAC6-220ENST00000477528 CDCA5Q96FF9 252 aa15.18■□□□□ 0.02
HDAC6-220ENST00000477528 NIFKQ9BYG3 293 aaKnown RBP15.18■□□□□ 0.02
HDAC6-220ENST00000477528 DDIT4Q9NX09 232 aa15.18■□□□□ 0.02
HDAC6-220ENST00000477528 ACTL7BQ9Y614 415 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms