RNA–Protein interactions for RNA: ENST00000476045.5

VPS13D-206, Transcript of vacuolar protein sorting 13 homolog D, human

TSL 5

Gene VPS13D, Length 380 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13D-206	ENST00000476045	SPTLC2	O15270	562 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	INPPL1	O15357	1258 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	ASAP2	O43150	1006 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	MARCH6	O60337	910 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	NEMF	O60524	1076 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	ZNF623	O75123	536 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	ERLIN2	O94905	339 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	LYPLA2	O95372	231 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	TDP2	O95551	362 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	GLP2R	O95838	553 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	C1QTNF9	P0C862	333 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	CDK11B	P21127	795 aa	Known RBP	4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	CFP	P27918	469 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	MARCKS	P29966	332 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	GTF2F1	P35269	517 aa	Known RBP eCLIP	4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	KRT2	P35908	639 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	MTHFR	P42898	656 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	NRIP1	P48552	1158 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	ALDH7A1	P49419	539 aa	Known RBP	4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	CBX1	P83916	185 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	POU5F1B	Q06416	359 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	SIGLEC14	Q08ET2	396 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	CAMK1	Q14012	370 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	EMC2	Q15006	297 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	ZRSR1	Q15695	479 aa	Known RBP	4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	NPY5R	Q15761	445 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	UGCG	Q16739	394 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	INF2	Q27J81	1249 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	LETM2	Q2VYF4	491 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	FBLN7	Q53RD9	439 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	CLLU1OS	Q5K130	101 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	PLPP4	Q5VZY2	271 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	HAUS3	Q68CZ6	603 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	ATL3	Q6DD88	541 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	CES5A	Q6NT32	575 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	NOTUM	Q6P988	496 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	CYP26C1	Q6V0L0	522 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	OTUD6A	Q7L8S5	288 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	CATSPER4	Q7RTX7	472 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	TMC6	Q7Z403	805 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	BMP8A	Q7Z5Y6	402 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	RTN4RL1	Q86UN2	441 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	SUGP1	Q8IWZ8	645 aa	Known RBP	4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	C4orf19	Q8IY42	314 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	GPR65	Q8IYL9	337 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	SLC39A11	Q8N1S5	342 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	PDCL2	Q8N4E4	241 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	LRRC71	Q8N4P6	559 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	C19orf47	Q8N9M1	422 aa	Known RBP	4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	LINC00301	Q8NCQ3	95 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	MCPH1	Q8NEM0	835 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	ZBTB10	Q96DT7	871 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	DHRS1	Q96LJ7	313 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	RIPOR3	Q96MK2	946 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	CASD1	Q96PB1	797 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	DIRC2	Q96SL1	478 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	TCF25	Q9BQ70	676 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	TMEM175	Q9BSA9	504 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	CCDC94	Q9BW85	323 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	NFKBIZ	Q9BYH8	718 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	RHOBTB2	Q9BYZ6	727 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	ZBP1	Q9H171	429 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	IRF2BPL	Q9H1B7	796 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	EPHX3	Q9H6B9	360 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	DHX33	Q9H6R0	707 aa	Known RBP	4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	ZNF552	Q9H707	407 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	CWH43	Q9H720	699 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	ZSWIM4	Q9H7M6	989 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	SFXN1	Q9H9B4	322 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	ALG13	Q9NP73	1137 aa	Known RBP	4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	CYP26B1	Q9NR63	512 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	CHST7	Q9NS84	486 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	TYW1	Q9NV66	732 aa	Known RBP	4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	IFNK	Q9P0W0	207 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	SUCLA2	Q9P2R7	463 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	SSX2IP	Q9Y2D8	614 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	USP15	Q9Y4E8	981 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	PCDHGB7	Q9Y5F8	929 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	USP34	Q70CQ2	3546 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	F5	P12259	2224 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	VWA8	A3KMH1	1905 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	MYH15	Q9Y2K3	1946 aa		4.62	□□□□□ -1.67
VPS13D-206	ENST00000476045	MYOCOS	A0A1B0GUC4	107 aa		4.61	□□□□□ -1.67
VPS13D-206	ENST00000476045	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	4.61	□□□□□ -1.67
VPS13D-206	ENST00000476045	FADS2P1	A8MWK0	482 aa		4.61	□□□□□ -1.67
VPS13D-206	ENST00000476045	SLC37A4	O43826	429 aa		4.61	□□□□□ -1.67
VPS13D-206	ENST00000476045	PSPN	O60542	156 aa		4.61	□□□□□ -1.67
VPS13D-206	ENST00000476045	CCNT1	O60563	726 aa	Known RBP	4.61	□□□□□ -1.67
VPS13D-206	ENST00000476045	ZC3H11A	O75152	810 aa	Known RBP eCLIP	4.61	□□□□□ -1.67
VPS13D-206	ENST00000476045	ZNF202	O95125	648 aa		4.61	□□□□□ -1.67
VPS13D-206	ENST00000476045	YEATS4	O95619	227 aa		4.61	□□□□□ -1.67
VPS13D-206	ENST00000476045	CAVIN2	O95810	425 aa		4.61	□□□□□ -1.67
VPS13D-206	ENST00000476045	UROD	P06132	367 aa		4.61	□□□□□ -1.67
VPS13D-206	ENST00000476045	CTSA	P10619	480 aa		4.61	□□□□□ -1.67
VPS13D-206	ENST00000476045	FGFR1	P11362	822 aa		4.61	□□□□□ -1.67
VPS13D-206	ENST00000476045	SKIL	P12757	684 aa		4.61	□□□□□ -1.67
VPS13D-206	ENST00000476045	PFKFB1	P16118	471 aa		4.61	□□□□□ -1.67
VPS13D-206	ENST00000476045	ATP2B1	P20020	1258 aa		4.61	□□□□□ -1.67
VPS13D-206	ENST00000476045	MUT	P22033	750 aa		4.61	□□□□□ -1.67
VPS13D-206	ENST00000476045	DNAJB1	P25685	340 aa		4.61	□□□□□ -1.67

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