RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 Q6ZTC4 211 aa4.26□□□□□ -1.73
CCDC88A-212ENST00000474059 USP45Q70EL2 814 aa4.26□□□□□ -1.73
CCDC88A-212ENST00000474059 USP43Q70EL4 1123 aa4.26□□□□□ -1.73
CCDC88A-212ENST00000474059 LIX1LQ8IVB5 337 aa4.26□□□□□ -1.73
CCDC88A-212ENST00000474059 SFTPA1Q8IWL2 248 aa4.26□□□□□ -1.73
CCDC88A-212ENST00000474059 PLBD2Q8NHP8 589 aa4.26□□□□□ -1.73
CCDC88A-212ENST00000474059 CUL5Q93034 780 aa4.26□□□□□ -1.73
CCDC88A-212ENST00000474059 CTHRC1Q96CG8 243 aa4.26□□□□□ -1.73
CCDC88A-212ENST00000474059 MRGPRX1Q96LB2 322 aa4.26□□□□□ -1.73
CCDC88A-212ENST00000474059 CADPSQ9ULU8 1353 aa4.26□□□□□ -1.73
CCDC88A-212ENST00000474059 CLSTN1O94985 981 aa4.25□□□□□ -1.73
CCDC88A-212ENST00000474059 MT-CO3P00414 261 aa4.25□□□□□ -1.73
CCDC88A-212ENST00000474059 PRKCBP05771 671 aa4.25□□□□□ -1.73
CCDC88A-212ENST00000474059 CTSAP10619 480 aa4.25□□□□□ -1.73
CCDC88A-212ENST00000474059 UCP3P55916 312 aa4.25□□□□□ -1.73
CCDC88A-212ENST00000474059 LMAN2Q12907 356 aa4.25□□□□□ -1.73
CCDC88A-212ENST00000474059 TMTC4Q5T4D3 741 aa4.25□□□□□ -1.73
CCDC88A-212ENST00000474059 CATIPQ7Z7H3 387 aa4.25□□□□□ -1.73
CCDC88A-212ENST00000474059 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.25□□□□□ -1.73
CCDC88A-212ENST00000474059 FAM167AQ96KS9 214 aa4.25□□□□□ -1.73
CCDC88A-212ENST00000474059 FYTTD1Q96QD9 318 aaKnown RBP4.25□□□□□ -1.73
CCDC88A-212ENST00000474059 AMFRQ9UKV5 643 aa4.25□□□□□ -1.73
CCDC88A-212ENST00000474059 SHOC2Q9UQ13 582 aa4.25□□□□□ -1.73
CCDC88A-212ENST00000474059 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.25□□□□□ -1.73
CCDC88A-212ENST00000474059 B4DGG1 531 aa4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 H3BNX3 289 aa4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 POU2F2P09086 479 aa4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 LRPAP1P30533 357 aa4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 GKP32189 559 aa4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 SLC11A2P49281 568 aa4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 LARS2Q15031 903 aaKnown RBP4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 PTPN21Q16825 1174 aa4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 THEMIS2Q5TEJ8 643 aa4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 C18orf65Q6ZTR6 163 aa4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 MIER2Q8N344 545 aa4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 ARFGAP1Q8N6T3 406 aa4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 BRIX1Q8TDN6 353 aaKnown RBP4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 TMEM171Q8WVE6 324 aa4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 RSPRY1Q96DX4 576 aa4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 ZFYVE19Q96K21 471 aa4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 TRMOQ9BU70 441 aa4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 KRTAP4-4Q9BYR3 166 aa4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 FAM234AQ9H0X4 552 aa4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 POT1Q9NUX5 634 aa4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 PCDHA6Q9UN73 950 aa4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 TMA7Q9Y2S6 64 aaKnown RBP4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 MED16Q9Y2X0 877 aa4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 PRKAB1Q9Y478 270 aa4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 SQORQ9Y6N5 450 aa4.24□□□□□ -1.73
CCDC88A-212ENST00000474059 C4orf47A7E2U8 309 aa4.23□□□□□ -1.73
CCDC88A-212ENST00000474059 PRSS44E7EML9 344 aa4.23□□□□□ -1.73
CCDC88A-212ENST00000474059 PMPCBO75439 489 aa4.23□□□□□ -1.73
CCDC88A-212ENST00000474059 PLA2G2AP14555 144 aa4.23□□□□□ -1.73
CCDC88A-212ENST00000474059 DIO1P49895 249 aa4.23□□□□□ -1.73
CCDC88A-212ENST00000474059 GUCY2FP51841 1108 aa4.23□□□□□ -1.73
CCDC88A-212ENST00000474059 ID2Q02363 134 aa4.23□□□□□ -1.73
CCDC88A-212ENST00000474059 ITKQ08881 620 aa4.23□□□□□ -1.73
CCDC88A-212ENST00000474059 PTCHD3Q3KNS1 767 aa4.23□□□□□ -1.73
CCDC88A-212ENST00000474059 ZNF549Q6P9A3 640 aa4.23□□□□□ -1.73
CCDC88A-212ENST00000474059 PNMA8AQ86V59 439 aaPredicted RBP4.23□□□□□ -1.73
CCDC88A-212ENST00000474059 GAS2L3Q86XJ1 694 aa4.23□□□□□ -1.73
CCDC88A-212ENST00000474059 FAM177A1Q8N128 213 aaPredicted RBP4.23□□□□□ -1.73
CCDC88A-212ENST00000474059 B4GALNT2Q8NHY0 566 aa4.23□□□□□ -1.73
CCDC88A-212ENST00000474059 MTMR8Q96EF0 704 aa4.23□□□□□ -1.73
CCDC88A-212ENST00000474059 SLC35A4Q96G79 324 aa4.23□□□□□ -1.73
CCDC88A-212ENST00000474059 KAZALD1Q96I82 304 aa4.23□□□□□ -1.73
CCDC88A-212ENST00000474059 C17orf80Q9BSJ5 609 aa4.23□□□□□ -1.73
CCDC88A-212ENST00000474059 GTPBP4Q9BZE4 634 aaKnown RBP4.23□□□□□ -1.73
CCDC88A-212ENST00000474059 A0A087WWL8 130 aa4.22□□□□□ -1.73
CCDC88A-212ENST00000474059 GCATO75600 419 aa4.22□□□□□ -1.73
CCDC88A-212ENST00000474059 WNT3P56703 355 aa4.22□□□□□ -1.73
CCDC88A-212ENST00000474059 KRTAP10-5P60370 271 aa4.22□□□□□ -1.73
CCDC88A-212ENST00000474059 RHDQ02161 417 aa4.22□□□□□ -1.73
CCDC88A-212ENST00000474059 MTX1Q13505 466 aa4.22□□□□□ -1.73
CCDC88A-212ENST00000474059 AMOTQ4VCS5 1084 aa4.22□□□□□ -1.73
CCDC88A-212ENST00000474059 EGFLAMQ63HQ2 1017 aa4.22□□□□□ -1.73
CCDC88A-212ENST00000474059 COLCA1Q6ZS62 124 aa4.22□□□□□ -1.73
CCDC88A-212ENST00000474059 DPCDQ9BVM2 203 aaPredicted RBP4.22□□□□□ -1.73
CCDC88A-212ENST00000474059 GAR1Q9NY12 217 aaKnown RBP4.22□□□□□ -1.73
CCDC88A-212ENST00000474059 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.22□□□□□ -1.73
CCDC88A-212ENST00000474059 H3BUI4 141 aa4.21□□□□□ -1.74
CCDC88A-212ENST00000474059 SPRY2O43597 315 aa4.21□□□□□ -1.74
CCDC88A-212ENST00000474059 ME1P48163 572 aa4.21□□□□□ -1.74
CCDC88A-212ENST00000474059 COPB1P53618 953 aaKnown RBP4.21□□□□□ -1.74
CCDC88A-212ENST00000474059 HYAL1Q12794 435 aa4.21□□□□□ -1.74
CCDC88A-212ENST00000474059 PTCHD4Q6ZW05 846 aa4.21□□□□□ -1.74
CCDC88A-212ENST00000474059 SIRT6Q8N6T7 355 aa4.21□□□□□ -1.74
CCDC88A-212ENST00000474059 WDYHV1Q96HA8 205 aa4.21□□□□□ -1.74
CCDC88A-212ENST00000474059 CCDC17Q96LX7 622 aa4.21□□□□□ -1.74
CCDC88A-212ENST00000474059 MOGAT1Q96PD6 335 aa4.21□□□□□ -1.74
CCDC88A-212ENST00000474059 P2RX7Q99572 595 aaKnown RBP4.21□□□□□ -1.74
CCDC88A-212ENST00000474059 MLXIPQ9HAP2 919 aa4.21□□□□□ -1.74
CCDC88A-212ENST00000474059 TFCP2L1Q9NZI6 479 aa4.21□□□□□ -1.74
CCDC88A-212ENST00000474059 HS3ST3B1Q9Y662 390 aa4.21□□□□□ -1.74
CCDC88A-212ENST00000474059 FER1L4A9Z1Z3 1794 aa4.21□□□□□ -1.74
CCDC88A-212ENST00000474059 TTBK1Q5TCY1 1321 aaPredicted RBP4.21□□□□□ -1.74
CCDC88A-212ENST00000474059 KRT86O43790 486 aa4.2□□□□□ -1.74
CCDC88A-212ENST00000474059 ALDH2P05091 517 aa4.2□□□□□ -1.74
CCDC88A-212ENST00000474059 ARFIP2P53365 341 aa4.2□□□□□ -1.74
CCDC88A-212ENST00000474059 YPEL5P62699 121 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms