RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 ATP6V0D2Q8N8Y2 350 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 LRRC39Q96DD0 335 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 UBAP1Q9NZ09 502 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 MYH14Q7Z406 1995 aaKnown RBP13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 EYA4O95677 639 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 DLGAP3O95886 979 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 FAM83EQ2M2I3 478 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 IFRD1O00458 451 aaPredicted RBP13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 STAG3L1P0CL83 205 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 UBA1P22314 1058 aaKnown RBP13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 HIRAP54198 1017 aaPredicted RBP13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 MTF1Q14872 753 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 DOK6Q6PKX4 331 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 MARK2Q7KZI7 788 aaKnown RBP13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 CYP4X1Q8N118 509 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 NMRK1Q9NWW6 199 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 MARK1Q9P0L2 795 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 PRODHO43272 600 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 VPS26AO75436 327 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 NDUFB10O96000 172 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 CLK2P49760 499 aaKnown RBP13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 SGCGQ13326 291 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 CHP1Q99653 195 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 CYP39A1Q9NYL5 469 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 RUVBL2Q9Y230 463 aaKnown RBP13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 HNRNPRO43390 633 aaKnown RBP13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 GMPSP49915 693 aaPredicted RBP13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 MARSP56192 900 aaKnown RBP13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 DENND5BQ6ZUT9 1274 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 LRRC8DQ7L1W4 858 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 CATSPER1Q8NEC5 780 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 DEFB129Q9H1M3 183 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 HEATR1Q9H583 2144 aaKnown RBP13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 PTPRTO14522 1441 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 ATP8B1O43520 1251 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 CETPP11597 493 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 RRM2P31350 389 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 NUDT2P50583 147 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 EPHA7Q15375 998 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 TRIP10Q15642 601 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 C16orf89Q6UX73 402 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 FRMD5Q7Z6J6 570 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 SRBD1Q8N5C6 995 aaKnown RBP13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 CLCC1Q96S66 551 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 SMPD4Q9NXE4 827 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 POM121L1PQ3SYA9 428 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 AASDHQ4L235 1098 aaPredicted RBP13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 MTSS1LQ765P7 747 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 ACOT1Q86TX2 421 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 IZUMO1Q8IYV9 350 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 RIC8BQ9NVN3 520 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 DPP3Q9NY33 737 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 VTI1BQ9UEU0 232 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 SH3GLB1Q9Y371 365 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 ABCC2Q92887 1545 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 KATNA1O75449 491 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 PDIA6Q15084 440 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 TAF8Q7Z7C8 310 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 TSPAN14Q8NG11 270 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 SOAT2O75908 522 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 UMPSP11172 480 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 S100GP29377 79 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 TCF7P36402 384 aaPredicted RBP13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 GJD4Q96KN9 370 aaPredicted RBP13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 PIGUQ9H490 435 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 MYOZ2Q9NPC6 264 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 EVA1BQ9NVM1 165 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 SMARCAL1Q9NZC9 954 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 HLA-DRAP01903 254 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 GPD1P21695 349 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 HALP42357 657 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 OR8H2Q8N162 312 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 WDR36Q8NI36 951 aaKnown RBP13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 IL1RAPL1Q9NZN1 696 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 SLC9A8Q9Y2E8 581 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 PCDHB9Q9Y5E1 797 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 ERI2A8K979 691 aaKnown RBP13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 FMO5P49326 533 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 PRUNE1Q86TP1 453 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 MDM1Q8TC05 714 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 BTBD9Q96Q07 612 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 CLPBQ9H078 707 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 MIR1-1HGQ9H1L0 117 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 PCDHB12Q9Y5F1 795 aa13.68□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 NECTIN1Q15223 517 aa13.67□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 PARP9Q8IXQ6 854 aa13.67□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 STK33Q9BYT3 514 aa13.67□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 RHBGQ9H310 441 aa13.67□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 HPS5Q9UPZ3 1129 aa13.67□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 HLA-DQA2P01906 255 aa13.67□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 STAT4Q14765 748 aa13.67□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 CACHD1Q5VU97 1274 aa13.67□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 ZNF544Q6NX49 715 aa13.67□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 KIF2BQ8N4N8 673 aa13.67□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 CMTM5Q96DZ9 223 aa13.67□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 LRRC1Q9BTT6 524 aa13.67□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 WDR41Q9HAD4 459 aa13.67□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 KLHL3Q9UH77 587 aa13.67□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 DYRK1BQ9Y463 629 aa13.67□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 SNX4O95219 450 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms