RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, human

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13A-210	ENST00000471439	OPTN	Q96CV9	577 aa		4.97	□□□□□ -1.61
VPS13A-210	ENST00000471439	C8orf48	Q96LL4	319 aa		4.97	□□□□□ -1.61
VPS13A-210	ENST00000471439	AIFM3	Q96NN9	605 aa		4.97	□□□□□ -1.61
VPS13A-210	ENST00000471439	TAAR9	Q96RI9	348 aa		4.97	□□□□□ -1.61
VPS13A-210	ENST00000471439	PDCD2L	Q9BRP1	358 aa		4.97	□□□□□ -1.61
VPS13A-210	ENST00000471439	NDC1	Q9BTX1	674 aa		4.97	□□□□□ -1.61
VPS13A-210	ENST00000471439	LDAH	Q9H6V9	325 aa		4.97	□□□□□ -1.61
VPS13A-210	ENST00000471439	MYOZ2	Q9NPC6	264 aa		4.97	□□□□□ -1.61
VPS13A-210	ENST00000471439	RBM12	Q9NTZ6	932 aa	Known RBP	4.97	□□□□□ -1.61
VPS13A-210	ENST00000471439	HDAC5	Q9UQL6	1122 aa		4.97	□□□□□ -1.61
VPS13A-210	ENST00000471439	PCDHA13	Q9Y5I0	950 aa		4.97	□□□□□ -1.61
VPS13A-210	ENST00000471439	MTCH2	Q9Y6C9	303 aa		4.97	□□□□□ -1.61
VPS13A-210	ENST00000471439	AK9	Q5TCS8	1911 aa		4.97	□□□□□ -1.61
VPS13A-210	ENST00000471439	COL4A4	P53420	1690 aa	Predicted RBP	4.96	□□□□□ -1.61
VPS13A-210	ENST00000471439	UBR5	O95071	2799 aa	Predicted RBP	4.96	□□□□□ -1.62
VPS13A-210	ENST00000471439	PRR5-ARHGAP8	B1AHC4	643 aa		4.96	□□□□□ -1.62
VPS13A-210	ENST00000471439	NCR1	O76036	304 aa		4.96	□□□□□ -1.62
VPS13A-210	ENST00000471439	IL9	P15248	144 aa		4.96	□□□□□ -1.62
VPS13A-210	ENST00000471439	FPR1	P21462	350 aa		4.96	□□□□□ -1.62
VPS13A-210	ENST00000471439	PTPN7	P35236	360 aa		4.96	□□□□□ -1.62
VPS13A-210	ENST00000471439	WAS	P42768	502 aa		4.96	□□□□□ -1.62
VPS13A-210	ENST00000471439	SLC16A1	P53985	500 aa		4.96	□□□□□ -1.62
VPS13A-210	ENST00000471439	VCP	P55072	806 aa	Known RBP	4.96	□□□□□ -1.62
VPS13A-210	ENST00000471439	TBX4	P57082	545 aa		4.96	□□□□□ -1.62
VPS13A-210	ENST00000471439	NHLH2	Q02577	135 aa		4.96	□□□□□ -1.62
VPS13A-210	ENST00000471439	GALE	Q14376	348 aa		4.96	□□□□□ -1.62
VPS13A-210	ENST00000471439	USP45	Q70EL2	814 aa		4.96	□□□□□ -1.62
VPS13A-210	ENST00000471439	GRAMD1C	Q8IYS0	662 aa		4.96	□□□□□ -1.62
VPS13A-210	ENST00000471439	PRR18	Q8N4B5	295 aa		4.96	□□□□□ -1.62
VPS13A-210	ENST00000471439	AMER2	Q8N7J2	671 aa		4.96	□□□□□ -1.62
VPS13A-210	ENST00000471439	PPP1R35	Q8TAP8	253 aa		4.96	□□□□□ -1.62
VPS13A-210	ENST00000471439	HPS3	Q969F9	1004 aa		4.96	□□□□□ -1.62
VPS13A-210	ENST00000471439	RUNDC1	Q96C34	613 aa		4.96	□□□□□ -1.62
VPS13A-210	ENST00000471439	CRAMP1	Q96RY5	1269 aa		4.96	□□□□□ -1.62
VPS13A-210	ENST00000471439	TRPM5	Q9NZQ8	1165 aa		4.96	□□□□□ -1.62
VPS13A-210	ENST00000471439	ATP6V0A2	Q9Y487	856 aa		4.96	□□□□□ -1.62
VPS13A-210	ENST00000471439	CENPJ	Q9HC77	1338 aa	Predicted RBP	4.96	□□□□□ -1.62
VPS13A-210	ENST00000471439	DUOX1	Q9NRD9	1551 aa		4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	DDX60	Q8IY21	1712 aa	Known RBP	4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	OTOGL	Q3ZCN5	2332 aa		4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	LRRC14B	A6NHZ5	514 aa		4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439		A6NNZ2	444 aa		4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	CXorf49	A8MYA2	514 aa	Predicted RBP	4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	BTBD19	C9JJ37	291 aa		4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	TRIM24	O15164	1050 aa		4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	OFD1	O75665	1012 aa		4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	AKAP5	P24588	427 aa		4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	RAP2B	P61225	183 aa		4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	GRM3	Q14832	879 aa		4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	PDCD4	Q53EL6	469 aa	Known RBP	4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	ATAT1	Q5SQI0	421 aa		4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	METRNL	Q641Q3	311 aa		4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	LRRC55	Q6ZSA7	311 aa		4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	ZGPAT	Q8N5A5	531 aa	Known RBP	4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	ZBTB34	Q8NCN2	500 aa		4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	SLC35G2	Q8TBE7	412 aa		4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	SPATA18	Q8TC71	538 aa		4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	STON2	Q8WXE9	905 aa		4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	MVB12A	Q96EY5	273 aa		4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	AGAP2	Q99490	1192 aa		4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	TTPAL	Q9BTX7	342 aa		4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	SENP6	Q9GZR1	1112 aa	Predicted RBP	4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	TMX4	Q9H1E5	349 aa	Predicted RBP	4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	OBP2A	Q9NY56	170 aa		4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	HS3ST4	Q9Y661	456 aa		4.95	□□□□□ -1.62
VPS13A-210	ENST00000471439	ABCC12	Q96J65	1359 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	RLF	Q13129	1914 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	WDFY3	Q8IZQ1	3526 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	CENPVL1	A0A0U1RR11	272 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	TRIM43B	A6NCK2	446 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	TMEM221	A6NGB7	291 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	UNC119B	A6NIH7	251 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	TBKBP1	A7MCY6	615 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439		M0R296	226 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	TAF4	O00268	1085 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	ECE2	O60344	883 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	PEX11B	O96011	259 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	ALOX15	P16050	662 aa	Predicted RBP	4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	ECHS1	P30084	290 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	CRHR1	P34998	444 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	PTGS2	P35354	604 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	SREBF1	P36956	1147 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	GNAL	P38405	381 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	DSC2	Q02487	901 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	DPT	Q07507	201 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	TARDBP	Q13148	414 aa	Known RBP eCLIP	4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	GTF2H3	Q13889	308 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	BMT2	Q1RMZ1	405 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	AFMID	Q63HM1	303 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	ZNF572	Q7Z3I7	529 aa	Predicted RBP	4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	GDF7	Q7Z4P5	450 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	RHOT1	Q8IXI2	618 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	PROKR1	Q8TCW9	393 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	TFAP2C	Q92754	450 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	HAS1	Q92839	578 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	LENG9	Q96B70	501 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	TRIM43	Q96BQ3	446 aa	Predicted RBP	4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	RBM17	Q96I25	401 aa	Known RBP	4.94	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms