RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 HOXC13P31276 330 aa17.63■□□□□ 0.41
CCDC28B-204ENST00000469003 CDH8P55286 799 aa17.63■□□□□ 0.41
CCDC28B-204ENST00000469003 SLC7A9P82251 487 aa17.63■□□□□ 0.41
CCDC28B-204ENST00000469003 SPEM2Q0P670 501 aa17.63■□□□□ 0.41
CCDC28B-204ENST00000469003 TAF10Q12962 218 aa17.63■□□□□ 0.41
CCDC28B-204ENST00000469003 NAIF1Q69YI7 327 aaPredicted RBP17.63■□□□□ 0.41
CCDC28B-204ENST00000469003 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.63■□□□□ 0.41
CCDC28B-204ENST00000469003 KIAA1958Q8N8K9 716 aa17.63■□□□□ 0.41
CCDC28B-204ENST00000469003 TMC2Q8TDI7 906 aa17.63■□□□□ 0.41
CCDC28B-204ENST00000469003 SLITRK1Q96PX8 696 aa17.63■□□□□ 0.41
CCDC28B-204ENST00000469003 SLC8A2Q9UPR5 921 aa17.63■□□□□ 0.41
CCDC28B-204ENST00000469003 ZDHHC9Q9Y397 364 aa17.63■□□□□ 0.41
CCDC28B-204ENST00000469003 ATP8B3O60423 1300 aa17.63■□□□□ 0.41
CCDC28B-204ENST00000469003 CHD8Q9HCK8 2581 aa17.63■□□□□ 0.41
CCDC28B-204ENST00000469003 KIAA1549LQ6ZVL6 1849 aa17.63■□□□□ 0.41
CCDC28B-204ENST00000469003 ATG2BQ96BY7 2078 aa17.62■□□□□ 0.41
CCDC28B-204ENST00000469003 CCDC163A0A0D9SF12 145 aa17.62■□□□□ 0.41
CCDC28B-204ENST00000469003 FAM237AA0A1B0GTK4 181 aa17.62■□□□□ 0.41
CCDC28B-204ENST00000469003 LEFTY2O00292 366 aa17.62■□□□□ 0.41
CCDC28B-204ENST00000469003 CLSTN1O94985 981 aa17.62■□□□□ 0.41
CCDC28B-204ENST00000469003 NFATC1O95644 943 aa17.62■□□□□ 0.41
CCDC28B-204ENST00000469003 OLFM2O95897 454 aa17.62■□□□□ 0.41
CCDC28B-204ENST00000469003 OAS1P00973 400 aaKnown RBP17.62■□□□□ 0.41
CCDC28B-204ENST00000469003 RPN1P04843 607 aaKnown RBP17.62■□□□□ 0.41
CCDC28B-204ENST00000469003 SYKP43405 635 aa17.62■□□□□ 0.41
CCDC28B-204ENST00000469003 RAP1GAPP47736 663 aa17.62■□□□□ 0.41
CCDC28B-204ENST00000469003 ZXDBP98169 803 aa17.62■□□□□ 0.41
CCDC28B-204ENST00000469003 CEP68Q76N32 757 aa17.62■□□□□ 0.41
CCDC28B-204ENST00000469003 NUP93Q8N1F7 819 aa17.62■□□□□ 0.41
CCDC28B-204ENST00000469003 TNIP3Q96KP6 325 aa17.62■□□□□ 0.41
CCDC28B-204ENST00000469003 LINC00597Q9H2U6 94 aa17.62■□□□□ 0.41
CCDC28B-204ENST00000469003 MYO16Q9Y6X6 1858 aa17.62■□□□□ 0.41
CCDC28B-204ENST00000469003 RTN3O95197 1032 aaPredicted RBP17.61■□□□□ 0.41
CCDC28B-204ENST00000469003 KIF20AO95235 890 aa17.61■□□□□ 0.41
CCDC28B-204ENST00000469003 ABL1P00519 1130 aa17.61■□□□□ 0.41
CCDC28B-204ENST00000469003 P4HA1P13674 534 aa17.61■□□□□ 0.41
CCDC28B-204ENST00000469003 YWHAQP27348 245 aa17.61■□□□□ 0.41
CCDC28B-204ENST00000469003 DLG4P78352 724 aa17.61■□□□□ 0.41
CCDC28B-204ENST00000469003 SGSM1Q2NKQ1 1148 aa17.61■□□□□ 0.41
CCDC28B-204ENST00000469003 ZACNQ401N2 412 aa17.61■□□□□ 0.41
CCDC28B-204ENST00000469003 SCARA5Q6ZMJ2 495 aa17.61■□□□□ 0.41
CCDC28B-204ENST00000469003 FAM35AQ86V20 835 aa17.61■□□□□ 0.41
CCDC28B-204ENST00000469003 CAMKK1Q8N5S9 505 aa17.61■□□□□ 0.41
CCDC28B-204ENST00000469003 FAM160A2Q8N612 972 aaPredicted RBP17.61■□□□□ 0.41
CCDC28B-204ENST00000469003 PDZD8Q8NEN9 1154 aa17.61■□□□□ 0.41
CCDC28B-204ENST00000469003 OVCA2Q8WZ82 227 aa17.61■□□□□ 0.41
CCDC28B-204ENST00000469003 TAF4BQ92750 862 aa17.61■□□□□ 0.41
CCDC28B-204ENST00000469003 EZH1Q92800 747 aaPredicted RBP17.61■□□□□ 0.41
CCDC28B-204ENST00000469003 CCDC47Q96A33 483 aaKnown RBP17.61■□□□□ 0.41
CCDC28B-204ENST00000469003 CHAMP1Q96JM3 812 aa17.61■□□□□ 0.41
CCDC28B-204ENST00000469003 RNF38Q9H0F5 515 aa17.61■□□□□ 0.41
CCDC28B-204ENST00000469003 SDCBP2Q9H190 292 aa17.61■□□□□ 0.41
CCDC28B-204ENST00000469003 TRAF3IP3Q9Y228 551 aa17.61■□□□□ 0.41
CCDC28B-204ENST00000469003 CPQQ9Y646 472 aa17.61■□□□□ 0.41
CCDC28B-204ENST00000469003 IKBKBO14920 756 aa17.6■□□□□ 0.41
CCDC28B-204ENST00000469003 MAPK13O15264 365 aa17.6■□□□□ 0.41
CCDC28B-204ENST00000469003 CALUO43852 315 aaPredicted RBP17.6■□□□□ 0.41
CCDC28B-204ENST00000469003 RHOBTB3O94955 611 aa17.6■□□□□ 0.41
CCDC28B-204ENST00000469003 PXNP49023 591 aaPredicted RBP17.6■□□□□ 0.41
CCDC28B-204ENST00000469003 NDUFA8P51970 172 aa17.6■□□□□ 0.41
CCDC28B-204ENST00000469003 IFRD2Q12894 506 aaPredicted RBP17.6■□□□□ 0.41
CCDC28B-204ENST00000469003 CEP135Q66GS9 1140 aa17.6■□□□□ 0.41
CCDC28B-204ENST00000469003 PAQR9Q6ZVX9 377 aa17.6■□□□□ 0.41
CCDC28B-204ENST00000469003 SV2AQ7L0J3 742 aa17.6■□□□□ 0.41
CCDC28B-204ENST00000469003 RPLP0P6Q8NHW5 317 aa17.6■□□□□ 0.41
CCDC28B-204ENST00000469003 GAB3Q8WWW8 586 aa17.6■□□□□ 0.41
CCDC28B-204ENST00000469003 FBXO32Q969P5 355 aa17.6■□□□□ 0.41
CCDC28B-204ENST00000469003 ELMO3Q96BJ8 720 aa17.6■□□□□ 0.41
CCDC28B-204ENST00000469003 SMARCD1Q96GM5 515 aa17.6■□□□□ 0.41
CCDC28B-204ENST00000469003 KCNK16Q96T55 309 aa17.6■□□□□ 0.41
CCDC28B-204ENST00000469003 MED10Q9BTT4 135 aa17.6■□□□□ 0.41
CCDC28B-204ENST00000469003 CDV3Q9UKY7 258 aaKnown RBP17.6■□□□□ 0.41
CCDC28B-204ENST00000469003 FRMD4BQ9Y2L6 1034 aa17.6■□□□□ 0.41
CCDC28B-204ENST00000469003 RALGAPA1Q6GYQ0 2036 aa17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 SLC9A3R1O14745 358 aaPredicted RBP17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 RPP40O75818 363 aaKnown RBP17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 PRR29P0C7W0 189 aa17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 OPRD1P41143 372 aa17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 ATXN1P54253 815 aaKnown RBP17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 CSRP2Q16527 193 aa17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 NFIL3Q16649 462 aa17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 C1orf220Q5T0J3 134 aa17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 SYT13Q7L8C5 426 aa17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 FILIP1Q7Z7B0 1213 aa17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 ACOT1Q86TX2 421 aa17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 DDX42Q86XP3 938 aaKnown RBP eCLIP17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 CCDC26Q8TAB7 109 aa17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 ACDQ96AP0 544 aa17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 SCAND2PQ9GZW5 306 aaPredicted RBP17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 DMAP1Q9NPF5 467 aaPredicted RBP17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 SEMA4GQ9NTN9 838 aa17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 POLR3BQ9NW08 1133 aaPredicted RBP17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 SMPD4Q9NXE4 827 aa17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 IL37Q9NZH6 218 aa17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 ATP6V1DQ9Y5K8 247 aa17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 EML5Q05BV3 1969 aa17.59■□□□□ 0.41
CCDC28B-204ENST00000469003 A0A1W2PQ27 194 aa17.58■□□□□ 0.4
CCDC28B-204ENST00000469003 A0A1W2PQ64 194 aa17.58■□□□□ 0.4
CCDC28B-204ENST00000469003 A0A1W2PQD8 194 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms