RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 ANKRD18BA2A2Z9 1011 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 TSPY2A6NKD2 308 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 RBMXL2O75526 392 aaKnown RBP5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 PRKD3O94806 890 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 PYGLP06737 847 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 TSPY3P0CV98 308 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 TSPY8P0CW00 308 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 FCER1AP12319 257 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 DDCP20711 480 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 MUTP22033 750 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 PAX7P23759 505 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 CHKAP35790 457 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 TSPY1Q01534 308 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 SLFN5Q08AF3 891 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 NUGGCQ68CJ6 796 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 GALNT17Q6IS24 598 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 SDCCAG8Q86SQ7 713 aaPredicted RBP5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 LNX2Q8N448 690 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 PPM1NQ8N819 430 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 COG1Q8WTW3 980 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 TMEM125Q96AQ2 219 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 AGAP3Q96P47 875 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 BARD1Q99728 777 aaKnown RBP5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 RMI1Q9H9A7 625 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 TRMT1Q9NXH9 659 aaKnown RBP5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 STK26Q9P289 416 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 SLC17A6Q9P2U8 582 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 NFKBIL1Q9UBC1 381 aaPredicted RBP5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 BLOC1S6Q9UL45 172 aa5.4□□□□□ -1.54
CCDC88A-210ENST00000468534 MYBBP1AQ9BQG0 1328 aaKnown RBP5.4□□□□□ -1.55
CCDC88A-210ENST00000468534 RAD54L2Q9Y4B4 1467 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 FAM171A2A8MVW0 826 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 RTCAO00442 366 aaKnown RBP5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 MPHOSPH10O00566 681 aaKnown RBP5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 PF4V1P10720 104 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 HOXD10P28358 340 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 ABCG1P45844 678 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 TM4SF4P48230 202 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 MTNR1BP49286 362 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 TPD52P55327 224 aaPredicted RBP5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 SH3BGRP55822 239 aaPredicted RBP5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 TMF1P82094 1093 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 GTF2H3Q13889 308 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 PSMD6Q15008 389 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 CCNG2Q16589 344 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 PTPN21Q16825 1174 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 ITPRIPL1Q6GPH6 555 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 IRGCQ6NXR0 463 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 TLDC1Q6P9B6 456 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 TMCO3Q6UWJ1 677 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 RHOT1Q8IXI2 618 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 CEP57L1Q8IYX8 460 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 CARNMT1Q8N4J0 409 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 NGEFQ8N5V2 710 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 MNS1Q8NEH6 495 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 LILRB1Q8NHL6 650 aaPredicted RBP5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 CYFIP2Q96F07 1278 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 SGCZQ96LD1 299 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 KATNAL1Q9BW62 490 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 MANSC1Q9H8J5 431 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 AGO4Q9HCK5 861 aaKnown RBP5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 MKS1Q9NXB0 559 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 CPSF2Q9P2I0 782 aaKnown RBP5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 ANKRD6Q9Y2G4 727 aa5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 CENPJQ9HC77 1338 aaPredicted RBP5.39□□□□□ -1.55
CCDC88A-210ENST00000468534 INO80B-WBP1J3KQ70 363 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 YY2O15391 372 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 IL33O95760 270 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 DDX58O95786 925 aaKnown RBP5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 DESP17661 470 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 CYP2C19P33261 490 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 NHLH1Q02575 133 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 PPFIA1Q13136 1202 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 SLC45A4Q5BKX6 768 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 EPHA10Q5JZY3 1008 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 CHST15Q7LFX5 561 aaPredicted RBP5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 TEX11Q8IYF3 940 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 NRSN1Q8IZ57 195 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 MSANTD4Q8NCY6 345 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 GABPB2Q8TAK5 448 aaPredicted RBP5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 SPATA18Q8TC71 538 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 SMCR8Q8TEV9 937 aaPredicted RBP5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 TRIM63Q969Q1 353 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 MOGAT1Q96PD6 335 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 TSGA13Q96PP4 275 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 MED15Q96RN5 788 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 RMDN3Q96TC7 470 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 SEC62Q99442 399 aaKnown RBP5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 C7orf25Q9BPX7 421 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 CCDC94Q9BW85 323 aaPredicted RBP5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 TLR10Q9BXR5 811 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 SLC26A6Q9BXS9 759 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 C11orf54Q9H0W9 315 aaPredicted RBP5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 CPNE5Q9HCH3 593 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 WDR35Q9P2L0 1181 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 RNF7Q9UBF6 113 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 PCSK1NQ9UHG2 260 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 SAP30BPQ9UHR5 308 aaKnown RBP5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 CDYLQ9Y232 598 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 CRYL1Q9Y2S2 319 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms