RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 IBSPP21815 317 aaPredicted RBP8.11□□□□□ -1.11
USP54-208ENST00000461520 NDUFV1P49821 464 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 GPC3P51654 580 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 STK3Q13188 491 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 SMAD4Q13485 552 aaKnown RBP8.11□□□□□ -1.11
USP54-208ENST00000461520 CLUL1Q15846 466 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 UGCGQ16739 394 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 IQCEQ6IPM2 695 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 CEP68Q76N32 757 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 DCP2Q8IU60 420 aaKnown RBP8.11□□□□□ -1.11
USP54-208ENST00000461520 EFHBQ8N7U6 833 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 KREMEN2Q8NCW0 462 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 ETNPPLQ8TBG4 499 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 DIO2Q92813 273 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 MSLNLQ96KJ4 702 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 CDCA3Q99618 268 aaPredicted RBP8.11□□□□□ -1.11
USP54-208ENST00000461520 PHF20Q9BVI0 1012 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 TMEM117Q9H0C3 514 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 CWH43Q9H720 699 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 TLR9Q9NR96 1032 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 TYW1Q9NV66 732 aaKnown RBP8.11□□□□□ -1.11
USP54-208ENST00000461520 DDX25Q9UHL0 483 aaKnown RBP8.11□□□□□ -1.11
USP54-208ENST00000461520 CD207Q9UJ71 328 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 LZTS1Q9Y250 596 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 TIMM13Q9Y5L4 95 aaPredicted RBP8.11□□□□□ -1.11
USP54-208ENST00000461520 WDFY4Q6ZS81 3184 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 C5orf42Q9H799 3197 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 STK36Q9NRP7 1315 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 IGKV6-21A0A0C4DH24 114 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 A0A0U1RQF3 1178 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 CCDC194A0A1B0GVG4 234 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 SH3D21A4FU49 640 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 LINC01565O15544 149 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 DKC1O60832 514 aaKnown RBP eCLIP8.1□□□□□ -1.11
USP54-208ENST00000461520 STBD1O95210 358 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 GJB6O95452 261 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 C8BP07358 591 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 FGFR1P11362 822 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 GCFC2P16383 781 aaKnown RBP8.1□□□□□ -1.11
USP54-208ENST00000461520 BCL6P41182 706 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 NRIP1P48552 1158 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 DNM2P50570 870 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 ANAPC15P60006 121 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 PSMC5P62195 406 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 RPL11P62913 178 aaKnown RBP8.1□□□□□ -1.11
USP54-208ENST00000461520 ARID5AQ03989 594 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 COASYQ13057 564 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 PPP2R5CQ13362 524 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 ANKRD1Q15327 319 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 LETM2Q2VYF4 491 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 MTERF2Q49AM1 385 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 PPP4R3AQ6IN85 833 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 ADGRD2Q7Z7M1 963 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 NEK8Q86SG6 692 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 ZNF410Q86VK4 478 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 ECHDC2Q86YB7 292 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 THNSL1Q8IYQ7 743 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 LRRC43Q8N309 656 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 FAM26EQ8N5C1 309 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 COLGALT1Q8NBJ5 622 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 RSPH1Q8WYR4 309 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 GJA10Q969M2 543 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 ZBTB8AQ96BR9 441 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 FAM20AQ96MK3 541 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 SCLT1Q96NL6 688 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 AIFM3Q96NN9 605 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 CASD1Q96PB1 797 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 CEP89Q96ST8 783 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 NAP1L4Q99733 375 aaKnown RBP8.1□□□□□ -1.11
USP54-208ENST00000461520 JPH2Q9BR39 696 aaPredicted RBP8.1□□□□□ -1.11
USP54-208ENST00000461520 GCOM2Q9BZD3 368 aaPredicted RBP8.1□□□□□ -1.11
USP54-208ENST00000461520 INO80BQ9C086 356 aaPredicted RBP8.1□□□□□ -1.11
USP54-208ENST00000461520 SLKQ9H2G2 1235 aaPredicted RBP8.1□□□□□ -1.11
USP54-208ENST00000461520 TLE6Q9H808 572 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 CHST12Q9NRB3 414 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 SPATA6Q9NWH7 488 aaPredicted RBP8.1□□□□□ -1.11
USP54-208ENST00000461520 DACT1Q9NYF0 836 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 PUF60Q9UHX1 559 aaKnown RBP8.1□□□□□ -1.11
USP54-208ENST00000461520 FBXL7Q9UJT9 491 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 KCNJ14Q9UNX9 436 aa8.1□□□□□ -1.11
USP54-208ENST00000461520 LOXHD1Q8IVV2 1947 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 KIAA1671Q9BY89 1806 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 TBX3O15119 743 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 MEFVO15553 781 aaPredicted RBP8.09□□□□□ -1.11
USP54-208ENST00000461520 SLC37A4O43826 429 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 PFKFB2O60825 505 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 MAFO75444 373 aaPredicted RBP8.09□□□□□ -1.11
USP54-208ENST00000461520 SCG5P05408 212 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 SFPQP23246 707 aaKnown RBP eCLIP8.09□□□□□ -1.11
USP54-208ENST00000461520 DNAJA1P31689 397 aaKnown RBP8.09□□□□□ -1.11
USP54-208ENST00000461520 PPM1AP35813 382 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 KRT17Q04695 432 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 DRP2Q13474 957 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 NT5DC1Q5TFE4 455 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 E4F1Q66K89 784 aaPredicted RBP8.09□□□□□ -1.11
USP54-208ENST00000461520 DENND5AQ6IQ26 1287 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 KCNT2Q6UVM3 1135 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 LRRC55Q6ZSA7 311 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 ANO5Q75V66 913 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 FRMD5Q7Z6J6 570 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms