RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 MAPKAPK2P49137 400 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 EIF4A1P60842 406 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 ERVK-24P63145 666 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 EXOSC9Q06265 439 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 MAP4K2Q12851 820 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 TRPC3Q13507 836 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 CUL1Q13616 776 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 CUL2Q13617 745 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 GTF2H3Q13889 308 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 TTLL4Q14679 1199 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 WDR43Q15061 677 aaKnown RBP eCLIP5.07□□□□□ -1.65e-6■□□□□ 10.7
CCDC88A-209ENST00000456975 ERCC6LQ2NKX8 1250 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 CTRB2Q6GPI1 263 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 DRICH1Q6PGQ1 229 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 C6orf89Q6UWU4 347 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 OLFM4Q6UX06 510 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 NOSTRINQ8IVI9 506 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 PLBD2Q8NHP8 589 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 NSUN6Q8TEA1 469 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 CYB5D2Q8WUJ1 264 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 CASP10Q92851 521 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 SLC47A1Q96FL8 570 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 NLRP4Q96MN2 994 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 ACAP3Q96P50 834 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 PLEKHF1Q96S99 279 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 SECISBP2Q96T21 854 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 CIB1Q99828 191 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 GAL3ST1Q99999 423 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 WDR6Q9NNW5 1121 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 CCDC177Q9NQR7 707 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 RAD18Q9NS91 495 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 IARS2Q9NSE4 1012 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 EHD3Q9NZN3 535 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 ATXN10Q9UBB4 475 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 AMACRQ9UHK6 382 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 TMEFF2Q9UIK5 374 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 CORO1CQ9ULV4 474 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 TMCO1Q9UM00 188 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 EXOC6BQ9Y2D4 811 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 GPR52Q9Y2T5 361 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 CAB39Q9Y376 341 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 RRP7AQ9Y3A4 280 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 DICER1Q9UPY3 1922 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 CACNA1SQ13698 1873 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 RPAP1Q9BWH6 1393 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 DLEC1Q9Y238 1755 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 FRMD3A2A2Y4 597 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 PTPDC1A2A3K4 754 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 CCDC162PA2VCL2 907 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 CDC14CA4D256 554 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 C16orf96A6NNT2 1141 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 B4E1Z4 1266 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 F5H423 210 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 TM4SF5O14894 197 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 WDR46O15213 610 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 TMPRSS2O15393 492 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 TSPAN9O75954 239 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 GOSR1O95249 250 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 ALDH2P05091 517 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 ALADP13716 330 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 POU2F1P14859 743 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 RPS6KB1P23443 525 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 HNF4AP41235 474 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 PSMC4P43686 418 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 IFNAR2P48551 515 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 ST5P78524 1137 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 CAP1Q01518 475 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 AIMP1Q12904 312 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 ITGB3BPQ13352 177 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 MXD4Q14582 209 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 SPCS2Q15005 226 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 ACAP2Q15057 778 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 MTHFSDQ2M296 383 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 KRTCAP3Q53RY4 240 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 IFIT1BQ5T764 474 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 GPR158Q5T848 1215 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 FYB2Q5VWT5 728 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 CLEC2AQ6UVW9 174 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 TGFBRAP1Q8WUH2 860 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 IRGQQ8WZA9 623 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 RAPGEF5Q92565 580 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 GFM2Q969S9 779 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 HDAC11Q96DB2 347 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 EGLN2Q96KS0 407 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 RMDN3Q96TC7 470 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 CHCHD6Q9BRQ6 235 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 ADPGKQ9BRR6 497 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 ERP44Q9BS26 406 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 MCMBPQ9BTE3 642 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 PUS3Q9BZE2 481 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 LMAN2LQ9H0V9 348 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 SMOC1Q9H4F8 434 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 TOPORSQ9NS56 1045 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 RNF181Q9P0P0 153 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 CIDEBQ9UHD4 219 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 ZBTB1Q9Y2K1 713 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 PCDHB12Q9Y5F1 795 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 PCDHGB6Q9Y5F9 930 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 PCDHGB5Q9Y5G0 923 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms