RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 SLC4A5Q9BY07 1137 aa15.77■□□□□ 0.11
LDLR-202ENST00000455727 VPS37BQ9H9H4 285 aa15.77■□□□□ 0.11
LDLR-202ENST00000455727 PDCD11Q14690 1871 aaKnown RBP15.76■□□□□ 0.11
LDLR-202ENST00000455727 SRCAPQ6ZRS2 3230 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.76■□□□□ 0.11
LDLR-202ENST00000455727 PRPSAP2O60256 369 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 NPTXRO95502 500 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 RBP3P10745 1247 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 STX2P32856 288 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 PHBP35232 272 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 PSMC4P43686 418 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 NOMO1Q15155 1222 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 GOLGA7BQ2TAP0 167 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 UNC93AQ86WB7 457 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 ZDHHC17Q8IUH5 632 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 MAP7D3Q8IWC1 876 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 C12orf29Q8N999 325 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 SPATA18Q8TC71 538 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 TEKT4Q8WW24 435 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 SETD4Q9NVD3 440 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 GPR32O75388 356 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 GSTA1P08263 222 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 SCTRP47872 440 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 YARSP54577 528 aaKnown RBP15.76■□□□□ 0.11
LDLR-202ENST00000455727 CDH6P55285 790 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 DPYSL3Q14195 570 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 KIZQ2M2Z5 673 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 ZC3H12AQ5D1E8 599 aaKnown RBP15.76■□□□□ 0.11
LDLR-202ENST00000455727 EFHC2Q5JST6 749 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 PPP1R26Q5T8A7 1209 aaPredicted RBP15.76■□□□□ 0.11
LDLR-202ENST00000455727 OLFML1Q6UWY5 402 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 ALKAL1Q6UXT8 129 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 ATP11CQ8NB49 1132 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 BEST2Q8NFU1 509 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 PYROXD1Q8WU10 500 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 SLC35F5Q8WV83 523 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 ZMAT2Q96NC0 199 aaKnown RBP15.76■□□□□ 0.11
LDLR-202ENST00000455727 PLCD4Q9BRC7 762 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.76■□□□□ 0.11
LDLR-202ENST00000455727 SNTG2Q9NY99 539 aa15.76■□□□□ 0.11
LDLR-202ENST00000455727 SMG5Q9UPR3 1016 aaKnown RBP15.76■□□□□ 0.11
LDLR-202ENST00000455727 USP15Q9Y4E8 981 aaPredicted RBP15.76■□□□□ 0.11
LDLR-202ENST00000455727 NRCAMQ92823 1304 aa15.75■□□□□ 0.11
LDLR-202ENST00000455727 ZNF236Q9UL36 1845 aa15.75■□□□□ 0.11
LDLR-202ENST00000455727 POC1B-GALNT4F8VUJ3 575 aa15.75■□□□□ 0.11
LDLR-202ENST00000455727 GPX6P59796 221 aa15.75■□□□□ 0.11
LDLR-202ENST00000455727 IRF5Q13568 498 aa15.75■□□□□ 0.11
LDLR-202ENST00000455727 SPRED3Q2MJR0 410 aa15.75■□□□□ 0.11
LDLR-202ENST00000455727 CCDC14Q49A88 953 aa15.75■□□□□ 0.11
LDLR-202ENST00000455727 SH3PXD2AQ5TCZ1 1133 aa15.75■□□□□ 0.11
LDLR-202ENST00000455727 ANKRD22Q5VYY1 191 aa15.75■□□□□ 0.11
LDLR-202ENST00000455727 NUGGCQ68CJ6 796 aa15.75■□□□□ 0.11
LDLR-202ENST00000455727 PMF1Q6P1K2 205 aa15.75■□□□□ 0.11
LDLR-202ENST00000455727 NOTUMQ6P988 496 aa15.75■□□□□ 0.11
LDLR-202ENST00000455727 PLEKHH3Q7Z736 793 aa15.75■□□□□ 0.11
LDLR-202ENST00000455727 FAM71DQ8N9W8 422 aa15.75■□□□□ 0.11
LDLR-202ENST00000455727 RNF157Q96PX1 679 aa15.75■□□□□ 0.11
LDLR-202ENST00000455727 TBCBQ99426 244 aa15.75■□□□□ 0.11
LDLR-202ENST00000455727 MRPL45Q9BRJ2 306 aaKnown RBP15.75■□□□□ 0.11
LDLR-202ENST00000455727 C10orf88Q9H8K7 445 aa15.75■□□□□ 0.11
LDLR-202ENST00000455727 FGFR1OP2Q9NVK5 253 aa15.75■□□□□ 0.11
LDLR-202ENST00000455727 RABGEF1Q9UJ41 708 aa15.75■□□□□ 0.11
LDLR-202ENST00000455727 SNX9Q9Y5X1 595 aa15.75■□□□□ 0.11
LDLR-202ENST00000455727 CLUHO75153 1309 aa15.75■□□□□ 0.11
LDLR-202ENST00000455727 SMIM35A0A1B0GVV1 85 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 A6NJR5 290 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 GEMIN4P57678 1058 aaKnown RBP15.74■□□□□ 0.11
LDLR-202ENST00000455727 IL9RQ01113 521 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 SLC6A3Q01959 620 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 FAM110CQ1W6H9 321 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 C15orf59Q2T9L4 293 aaPredicted RBP15.74■□□□□ 0.11
LDLR-202ENST00000455727 HP1BP3Q5SSJ5 553 aaPredicted RBP15.74■□□□□ 0.11
LDLR-202ENST00000455727 FNBP1LQ5T0N5 605 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 FBXW10Q5XX13 1052 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 ARHGAP17Q68EM7 881 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 CATSPER4Q7RTX7 472 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 TRPM8Q7Z2W7 1104 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 SESTD1Q86VW0 696 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 TTC30AQ86WT1 665 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 PDIK1LQ8N165 341 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 DENND1AQ8TEH3 1009 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 GRAMD1AQ96CP6 724 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 PIWIL1Q96J94 861 aaKnown RBP15.74■□□□□ 0.11
LDLR-202ENST00000455727 TRABDQ9H4I3 376 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 CNTN3Q9P232 1028 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 PSMC3IPQ9P2W1 217 aaPredicted RBP15.74■□□□□ 0.11
LDLR-202ENST00000455727 ZNF487B1APH4 448 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 GOLGA8MH3BSY2 632 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 SUN1O94901 812 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 DESP17661 470 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 AXLP30530 894 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 FKBP1BP68106 108 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 ROR1Q01973 937 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 MMRN1Q13201 1228 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 ACOT1Q86TX2 421 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 KHSRPQ92945 711 aaKnown RBP eCLIP15.74■□□□□ 0.11
LDLR-202ENST00000455727 TGS1Q96RS0 853 aaKnown RBP15.74■□□□□ 0.11
LDLR-202ENST00000455727 TSPAN18Q96SJ8 248 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 PARK7Q99497 189 aaKnown RBP15.74■□□□□ 0.11
LDLR-202ENST00000455727 SSU72Q9NP77 194 aaKnown RBP15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms