RNA–Protein interactions for RNA: ENST00000453453.1

SNX17-204, Transcript of sorting nexin 17, humanhuman

TSL 1 (best)

Gene SNX17, Length 1,638 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-204ENST00000453453 FAM114A2Q9NRY5 505 aa16.68■□□□□ 0.26
SNX17-204ENST00000453453 DDX43Q9NXZ2 648 aaKnown RBP16.68■□□□□ 0.26
SNX17-204ENST00000453453 NR2E3Q9Y5X4 410 aa16.68■□□□□ 0.26
SNX17-204ENST00000453453 SF3B1O75533 1304 aaKnown RBP eCLIP16.68■□□□□ 0.263e-6■■■■■ 137.9
SNX17-204ENST00000453453 ANKRD62A6NC57 917 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 PGRMC1O00264 195 aaKnown RBP16.67■□□□□ 0.26
SNX17-204ENST00000453453 GABRDO14764 452 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 ITGB1P05556 798 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 GALTP07902 379 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 IGFBP6P24592 240 aaPredicted RBP16.67■□□□□ 0.26
SNX17-204ENST00000453453 ECHS1P30084 290 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 BCAR1P56945 870 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 IFT88Q13099 833 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 ANKRD20A8PQ5CZ79 823 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 OVOS1Q6IE37 1185 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 ACAD10Q6JQN1 1059 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 CD300LGQ6UXG3 332 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 OSTM1Q86WC4 334 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 PALB2Q86YC2 1186 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 PASD1Q8IV76 773 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 RASGEF1CQ8N431 466 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 ZNF689Q96CS4 500 aaPredicted RBP16.67■□□□□ 0.26
SNX17-204ENST00000453453 PSMB7Q99436 277 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 ZBED2Q9BTP6 218 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 RABEP2Q9H5N1 569 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 HESX1Q9UBX0 185 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 TIMM13Q9Y5L4 95 aaPredicted RBP16.67■□□□□ 0.26
SNX17-204ENST00000453453 SYN3O14994 580 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 FTLP02792 175 aaPredicted RBP16.67■□□□□ 0.26
SNX17-204ENST00000453453 CYP1A1P04798 512 aaPredicted RBP16.67■□□□□ 0.26
SNX17-204ENST00000453453 TMEM253P0C7T8 217 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 ELF1P32519 619 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 GALCP54803 685 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 ZNF844Q08AG5 666 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 PARP9Q8IXQ6 854 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 B3GALNT2Q8NCR0 500 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 CCDC26Q8TAB7 109 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 HERVK_113Q902F9 699 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 SLC9A7Q96T83 725 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 SYT15Q9BQS2 421 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.67■□□□□ 0.262e-6■■■□□ 17.8
SNX17-204ENST00000453453 LHX5Q9H2C1 402 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 CDH9Q9ULB4 789 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 TTC7AQ9ULT0 858 aaPredicted RBP16.67■□□□□ 0.26
SNX17-204ENST00000453453 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.67■□□□□ 0.26
SNX17-204ENST00000453453 SLC4A7Q9Y6M7 1214 aa16.67■□□□□ 0.26
SNX17-204ENST00000453453 F8W810 466 aa16.66■□□□□ 0.26
SNX17-204ENST00000453453 M0QYV0 167 aa16.66■□□□□ 0.26
SNX17-204ENST00000453453 O00370 1275 aa16.66■□□□□ 0.26
SNX17-204ENST00000453453 UNGP13051 313 aaPredicted RBP16.66■□□□□ 0.26
SNX17-204ENST00000453453 PTPN1P18031 435 aaKnown RBP16.66■□□□□ 0.26
SNX17-204ENST00000453453 LAG3P18627 525 aa16.66■□□□□ 0.26
SNX17-204ENST00000453453 LMO2P25791 158 aa16.66■□□□□ 0.26
SNX17-204ENST00000453453 NOMO3P69849 1222 aa16.66■□□□□ 0.26
SNX17-204ENST00000453453 CENPCQ03188 943 aa16.66■□□□□ 0.26
SNX17-204ENST00000453453 YWHAHQ04917 246 aaPredicted RBP16.66■□□□□ 0.26
SNX17-204ENST00000453453 GOLGA7BQ2TAP0 167 aa16.66■□□□□ 0.26
SNX17-204ENST00000453453 ARHGAP17Q68EM7 881 aa16.66■□□□□ 0.26
SNX17-204ENST00000453453 LCLAT1Q6UWP7 414 aa16.66■□□□□ 0.26
SNX17-204ENST00000453453 SYCE1Q8N0S2 351 aa16.66■□□□□ 0.26
SNX17-204ENST00000453453 ZNF558Q96NG5 402 aa16.66■□□□□ 0.26
SNX17-204ENST00000453453 ZSWIM1Q9BR11 485 aa16.66■□□□□ 0.26
SNX17-204ENST00000453453 PACSIN1Q9BY11 444 aa16.66■□□□□ 0.26
SNX17-204ENST00000453453 DPEP3Q9H4B8 488 aa16.66■□□□□ 0.26
SNX17-204ENST00000453453 CWH43Q9H720 699 aa16.66■□□□□ 0.26
SNX17-204ENST00000453453 RC3H2Q9HBD1 1191 aaKnown RBP16.66■□□□□ 0.26
SNX17-204ENST00000453453 FAM49BQ9NUQ9 324 aa16.66■□□□□ 0.26
SNX17-204ENST00000453453 TAS2R14Q9NYV8 317 aa16.66■□□□□ 0.26
SNX17-204ENST00000453453 COL4A6Q14031 1691 aa16.66■□□□□ 0.26
SNX17-204ENST00000453453 MICAL2O94851 1124 aa16.65■□□□□ 0.26
SNX17-204ENST00000453453 FTCDO95954 541 aa16.65■□□□□ 0.26
SNX17-204ENST00000453453 MYBL1P10243 752 aa16.65■□□□□ 0.26
SNX17-204ENST00000453453 EZRP15311 586 aaKnown RBP16.65■□□□□ 0.26
SNX17-204ENST00000453453 ABCB4P21439 1286 aa16.65■□□□□ 0.26
SNX17-204ENST00000453453 ACAT1P24752 427 aaKnown RBP16.65■□□□□ 0.26
SNX17-204ENST00000453453 SSTR3P32745 418 aaPredicted RBP16.65■□□□□ 0.26
SNX17-204ENST00000453453 CTNNA1P35221 906 aaKnown RBP16.65■□□□□ 0.26
SNX17-204ENST00000453453 TSPY1Q01534 308 aa16.65■□□□□ 0.26
SNX17-204ENST00000453453 HLTFQ14527 1009 aaKnown RBP eCLIP16.65■□□□□ 0.26
SNX17-204ENST00000453453 UAP1Q16222 522 aaPredicted RBP16.65■□□□□ 0.26
SNX17-204ENST00000453453 LIN9Q5TKA1 542 aa16.65■□□□□ 0.26
SNX17-204ENST00000453453 GKAP1Q5VSY0 366 aaPredicted RBP16.65■□□□□ 0.26
SNX17-204ENST00000453453 FUT10Q6P4F1 479 aa16.65■□□□□ 0.26
SNX17-204ENST00000453453 CYB5D1Q6P9G0 228 aa16.65■□□□□ 0.26
SNX17-204ENST00000453453 TMCO2Q7Z6W1 182 aaPredicted RBP16.65■□□□□ 0.26
SNX17-204ENST00000453453 HOOK3Q86VS8 718 aa16.65■□□□□ 0.26
SNX17-204ENST00000453453 FUKQ8N0W3 1084 aa16.65■□□□□ 0.26
SNX17-204ENST00000453453 C12orf29Q8N999 325 aa16.65■□□□□ 0.26
SNX17-204ENST00000453453 CPA5Q8WXQ8 436 aa16.65■□□□□ 0.26
SNX17-204ENST00000453453 SEC16BQ96JE7 1060 aa16.65■□□□□ 0.26
SNX17-204ENST00000453453 ACBD6Q9BR61 282 aa16.65■□□□□ 0.26
SNX17-204ENST00000453453 AAASQ9NRG9 546 aa16.65■□□□□ 0.26
SNX17-204ENST00000453453 MARCH5Q9NX47 278 aa16.65■□□□□ 0.26
SNX17-204ENST00000453453 HCSTQ9UBK5 93 aa16.65■□□□□ 0.26
SNX17-204ENST00000453453 TSPAN16Q9UKR8 245 aa16.65■□□□□ 0.26
SNX17-204ENST00000453453 NME7Q9Y5B8 376 aa16.65■□□□□ 0.26
SNX17-204ENST00000453453 ESYT3A0FGR9 886 aa16.64■□□□□ 0.25
SNX17-204ENST00000453453 ZSCAN5CA6NGD5 496 aaPredicted RBP16.64■□□□□ 0.25
SNX17-204ENST00000453453 HCRTO43612 131 aa16.64■□□□□ 0.25
SNX17-204ENST00000453453 GJB5O95377 273 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms