RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 SLC30A5Q8TAD4 765 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 PSMG2Q969U7 264 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 MYRFLQ96LU7 910 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 NOX5Q96PH1 765 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 PRKD2Q9BZL6 878 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 IL37Q9NZH6 218 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 FAM92AA1XBS5 289 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 LINC01565O15544 149 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 XYLBO75191 536 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 RFPL2O75678 378 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 PLEKP08567 350 aaPredicted RBP12.22□□□□□ -0.45
SCN9A-204ENST00000452182 CSH1P0DML2 217 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 CSH2P0DML3 217 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 GZMAP12544 262 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 TNFAIP3P21580 790 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 SSTR3P32745 418 aaPredicted RBP12.22□□□□□ -0.45
SCN9A-204ENST00000452182 GPR15P49685 360 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 NOMO3P69849 1222 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 CENPCQ03188 943 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 PDCLQ13371 301 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 ASTE1Q2TB18 679 aaPredicted RBP12.22□□□□□ -0.45
SCN9A-204ENST00000452182 PMF1Q6P1K2 205 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 TMEM110Q86TL2 294 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 SCML4Q8N228 414 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 ZNF707Q96C28 371 aaPredicted RBP12.22□□□□□ -0.45
SCN9A-204ENST00000452182 TRMT2BQ96GJ1 504 aaKnown RBP12.22□□□□□ -0.45
SCN9A-204ENST00000452182 PCDHB18PQ96TA0 734 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 TTLL2Q9BWV7 592 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 SLC4A5Q9BY07 1137 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 CLEC1BQ9P126 229 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 USP3Q9Y6I4 520 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 EYSQ5T1H1 3165 aa12.22□□□□□ -0.45
SCN9A-204ENST00000452182 ZNF638Q14966 1978 aaKnown RBP12.21□□□□□ -0.45
SCN9A-204ENST00000452182 CCDC195A0A1B0GUA6 201 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 SLC38A8A6NNN8 435 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 TULP2O00295 520 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 DDX3XO00571 662 aaKnown RBP eCLIP12.21□□□□□ -0.46
SCN9A-204ENST00000452182 TBX10O75333 385 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 RTN3O95197 1032 aaPredicted RBP12.21□□□□□ -0.46
SCN9A-204ENST00000452182 HMGA1P17096 107 aaKnown RBP12.21□□□□□ -0.46
SCN9A-204ENST00000452182 LTBRP36941 435 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 ACADSBP45954 432 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 KIF11P52732 1056 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 SLC5A3P53794 718 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 SNX16P57768 344 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 ITIH3Q06033 890 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 CLEC16AQ2KHT3 1053 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 SYCE2Q6PIF2 218 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 CCDC186Q7Z3E2 898 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 DNAJB7Q7Z6W7 309 aaPredicted RBP12.21□□□□□ -0.46
SCN9A-204ENST00000452182 TMTC1Q8IUR5 882 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 PASD1Q8IV76 773 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 ELMOD1Q8N336 334 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 MICALL1Q8N3F8 863 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 LEMD2Q8NC56 503 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 C1orf131Q8NDD1 294 aaKnown RBP12.21□□□□□ -0.46
SCN9A-204ENST00000452182 MSLNLQ96KJ4 702 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 ZNF512Q96ME7 567 aaPredicted RBP12.21□□□□□ -0.46
SCN9A-204ENST00000452182 CHP1Q99653 195 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 FBXO44Q9H4M3 255 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 NHEJ1Q9H9Q4 299 aaPredicted RBP12.21□□□□□ -0.46
SCN9A-204ENST00000452182 CLDND1Q9NY35 253 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 ADAMTS1Q9UHI8 967 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 CYTH4Q9UIA0 394 aa12.21□□□□□ -0.46
SCN9A-204ENST00000452182 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.2□□□□□ -0.46
SCN9A-204ENST00000452182 EIF4A3P38919 411 aaKnown RBP12.2□□□□□ -0.46
SCN9A-204ENST00000452182 GABRB2P47870 512 aa12.2□□□□□ -0.46
SCN9A-204ENST00000452182 EPHA5P54756 1037 aa12.2□□□□□ -0.46
SCN9A-204ENST00000452182 SLC18A3Q16572 532 aa12.2□□□□□ -0.46
SCN9A-204ENST00000452182 SDHAF4Q5VUM1 108 aa12.2□□□□□ -0.46
SCN9A-204ENST00000452182 PM20D1Q6GTS8 502 aa12.2□□□□□ -0.46
SCN9A-204ENST00000452182 PHF13Q86YI8 300 aaPredicted RBP12.2□□□□□ -0.46
SCN9A-204ENST00000452182 TMEM139Q8IV31 216 aa12.2□□□□□ -0.46
SCN9A-204ENST00000452182 CCDC170Q8IYT3 715 aa12.2□□□□□ -0.46
SCN9A-204ENST00000452182 MSANTD4Q8NCY6 345 aa12.2□□□□□ -0.46
SCN9A-204ENST00000452182 GIPC2Q8TF65 315 aa12.2□□□□□ -0.46
SCN9A-204ENST00000452182 PPP1R13BQ96KQ4 1090 aa12.2□□□□□ -0.46
SCN9A-204ENST00000452182 CCDC42Q96M95 316 aa12.2□□□□□ -0.46
SCN9A-204ENST00000452182 BAG1Q99933 345 aaPredicted RBP12.2□□□□□ -0.46
SCN9A-204ENST00000452182 TMEM121BQ9BXQ6 578 aaPredicted RBP12.2□□□□□ -0.46
SCN9A-204ENST00000452182 MIS12Q9H081 205 aa12.2□□□□□ -0.46
SCN9A-204ENST00000452182 LRRC4Q9HBW1 653 aa12.2□□□□□ -0.46
SCN9A-204ENST00000452182 AVENQ9NQS1 362 aaPredicted RBP12.2□□□□□ -0.46
SCN9A-204ENST00000452182 CNGB3Q9NQW8 809 aa12.2□□□□□ -0.46
SCN9A-204ENST00000452182 SEPT11Q9NVA2 429 aaKnown RBP12.2□□□□□ -0.46
SCN9A-204ENST00000452182 UXTQ9UBK9 157 aaPredicted RBP12.2□□□□□ -0.46
SCN9A-204ENST00000452182 BOLA1Q9Y3E2 137 aa12.2□□□□□ -0.46
SCN9A-204ENST00000452182 NCANO14594 1321 aa12.19□□□□□ -0.46
SCN9A-204ENST00000452182 A0A087X0T9 212 aa12.19□□□□□ -0.46
SCN9A-204ENST00000452182 CCL16O15467 120 aa12.19□□□□□ -0.46
SCN9A-204ENST00000452182 GABBR2O75899 941 aa12.19□□□□□ -0.46
SCN9A-204ENST00000452182 FAM228BP0C875 321 aa12.19□□□□□ -0.46
SCN9A-204ENST00000452182 PTPN2P17706 415 aa12.19□□□□□ -0.46
SCN9A-204ENST00000452182 MMP8P22894 467 aa12.19□□□□□ -0.46
SCN9A-204ENST00000452182 NSFP46459 744 aaKnown RBP12.19□□□□□ -0.46
SCN9A-204ENST00000452182 TKTL1P51854 596 aa12.19□□□□□ -0.46
SCN9A-204ENST00000452182 DLX2Q07687 328 aaPredicted RBP12.19□□□□□ -0.46
SCN9A-204ENST00000452182 CCDC173Q0VFZ6 552 aa12.19□□□□□ -0.46
SCN9A-204ENST00000452182 TAF12Q16514 161 aa12.19□□□□□ -0.46
SCN9A-204ENST00000452182 NAA35Q5VZE5 725 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms