RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, human

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSH6-204	ENST00000445503	MEI4	A8MW99	385 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	APOL1	O14791	398 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	DPEP1	P16444	411 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	CDKN2B	P42772	138 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	BACE1	P56817	501 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	PTPN20	Q4JDL3	420 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	ATF7IP2	Q5U623	682 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	POU5F2	Q8N7G0	328 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	NETO2	Q8NC67	525 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	PORCN	Q9H237	461 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	RNF19A	Q9NV58	838 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	HOXC10	Q9NYD6	342 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	ARHGAP28	Q9P2N2	729 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	APOBEC2	Q9Y235	224 aa	Known RBP	12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	DRG1	Q9Y295	367 aa	Known RBP	12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	STK10	O94804	968 aa	Known RBP	12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	EFNA5	P52803	228 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	ATXN3	P54252	364 aa	Predicted RBP	12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	MRPS35	P82673	323 aa	Known RBP	12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	KLF1	Q13351	362 aa	Predicted RBP	12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	RBBP5	Q15291	538 aa	Known RBP	12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	WASHC2D	Q5SRD0	308 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	THEMIS2	Q5TEJ8	643 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	SREK1	Q8WXA9	508 aa	Known RBP	12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	SKIV2L2	P42285	1042 aa	Known RBP	12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	CAPS	Q13938	189 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	TTC39B	Q5VTQ0	682 aa	Predicted RBP	12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	C16orf46	Q6P387	395 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	DNAAF3	Q8N9W5	541 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	TTC16	Q8NEE8	873 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	DDX50	Q9BQ39	737 aa	Known RBP	12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	CEP41	Q9BYV8	373 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	PPCS	Q9HAB8	311 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	SLC5A4	Q9NY91	659 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	RABGEF1	Q9UJ41	708 aa		12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	12.37	□□□□□ -0.43
MSH6-204	ENST00000445503	TM9SF1	O15321	606 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	PRPF4	O43172	522 aa	Known RBP eCLIP	12.36	□□□□□ -0.43	1e-7	■■■■■ 27.4
MSH6-204	ENST00000445503	ITGAV	P06756	1048 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	EN1	Q05925	392 aa	Predicted RBP	12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	SLC30A9	Q6PML9	568 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	B3GNT9	Q6UX72	402 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	ISLR2	Q6UXK2	745 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	FAM83A	Q86UY5	434 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	TEX2	Q8IWB9	1127 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	BRSK2	Q8IWQ3	736 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	NLRP7	Q8WX94	980 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	SEPT1	Q8WYJ6	367 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	OXNAD1	Q96HP4	312 aa	Predicted RBP	12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	CLMN	Q96JQ2	1002 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	AGAP3	Q96P47	875 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	ACSS3	Q9H6R3	686 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	TCRBV9S1A1T	A0A576	114 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	C2CD2L	O14523	706 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	ADCY3	O60266	1144 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	LSM8	O95777	96 aa	Known RBP	12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	GNAT1	P11488	350 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	GPD1	P21695	349 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	AP3M2	P53677	418 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	GPX6	P59796	221 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	TCEAL1	Q15170	157 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	LY6K	Q17RY6	165 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	SLC26A11	Q86WA9	606 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	C10orf82	Q8WW14	230 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	FBXL18	Q96ME1	805 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	HACL1	Q9UJ83	578 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	ATRNL1	Q5VV63	1379 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	PEX11A	O75192	247 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	LRCH4	O75427	683 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	TCEA3	O75764	348 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	TMEM63A	O94886	807 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	TPBGL	P0DKB5	382 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	KCNA2	P16389	499 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	ACO1	P21399	889 aa	Known RBP	12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	RBL1	P28749	1068 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	ADORA2B	P29275	332 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	TGFB2	P61812	414 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	CDK16	Q00536	496 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	BIRC2	Q13490	618 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	ACVR2B	Q13705	512 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	AMHR2	Q16671	573 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	PARP6	Q2NL67	630 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	WDR49	Q8IV35	697 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	CLPTM1L	Q96KA5	538 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	SCYL1	Q96KG9	808 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	SPATA33	Q96N06	139 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	NTPCR	Q9BSD7	190 aa	Known RBP	12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	PRKAG3	Q9UGI9	489 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503	FIS1	Q9Y3D6	152 aa		12.36	□□□□□ -0.43
MSH6-204	ENST00000445503		A0A0B4J269	797 aa		12.35	□□□□□ -0.43
MSH6-204	ENST00000445503	CYB561D2	O14569	222 aa		12.35	□□□□□ -0.43
MSH6-204	ENST00000445503	HNRNPCL1	O60812	293 aa	Known RBP	12.35	□□□□□ -0.43
MSH6-204	ENST00000445503	ASS1	P00966	412 aa	Known RBP	12.35	□□□□□ -0.43
MSH6-204	ENST00000445503	RPL10A	P62906	217 aa	Known RBP	12.35	□□□□□ -0.43
MSH6-204	ENST00000445503	AP2B1	P63010	937 aa		12.35	□□□□□ -0.43
MSH6-204	ENST00000445503	XRRA1	Q6P2D8	792 aa		12.35	□□□□□ -0.43
MSH6-204	ENST00000445503	TAS1R3	Q7RTX0	852 aa		12.35	□□□□□ -0.43
MSH6-204	ENST00000445503	APOPT1	Q96IL0	206 aa		12.35	□□□□□ -0.43
MSH6-204	ENST00000445503	ZNF395	Q9H8N7	513 aa	Predicted RBP	12.35	□□□□□ -0.43
MSH6-204	ENST00000445503	PAK5	Q9P286	719 aa		12.35	□□□□□ -0.43

Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms