RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 CSE1LP55060 971 aaKnown RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 TLE1Q04724 770 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 TNK2Q07912 1038 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 OASLQ15646 514 aaKnown RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 NFKBIBQ15653 356 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 ADIPOQQ15848 244 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 CCDC178Q5BJE1 867 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 ANKRD34AQ69YU3 496 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 MFSD5Q6N075 450 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 DCLRE1AQ6PJP8 1040 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 C8orf86Q6ZUL3 223 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 H1FNTQ75WM6 255 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 CHST3Q7LGC8 479 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 TBC1D21Q8IYX1 336 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 OR56A3Q8NH54 315 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 PHOSPHO1Q8TCT1 267 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 MAML1Q92585 1016 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 CYFIP2Q96F07 1278 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 PACSIN1Q9BY11 444 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 KRTAP9-2Q9BYQ4 174 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 OPA3Q9H6K4 179 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 TTC12Q9H892 705 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 SUGCTQ9HAC7 445 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 BRF2Q9HAW0 419 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 PAPOLBQ9NRJ5 636 aaKnown RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 SNTG1Q9NSN8 517 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 SPATA6Q9NWH7 488 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 DDX43Q9NXZ2 648 aaKnown RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 PLA2G3Q9NZ20 509 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP2.5□□□□□ -2.016e-11■■■■■ 36.3
CCDC88A-208ENST00000444458 NAALADL1Q9UQQ1 740 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 LOC102723971A0A1B0GUV8 181 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 H0YC42 278 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 FMO6PO60774 539 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 OPHN1O60890 802 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 PIAS2O75928 621 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 ABHD16AO95870 558 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 HMOX1P09601 288 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 GRK5P34947 590 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 PTPN7P35236 360 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 PLA2G5P39877 138 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 PSMB10P40306 273 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 SCN1BQ07699 218 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 FSTL1Q12841 308 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 PUM1Q14671 1186 aaKnown RBP eCLIP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 NTRK2Q16620 822 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 ZNF362Q5T0B9 420 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 ANO7Q6IWH7 933 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 MTFR2Q6P444 385 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 RNF111Q6ZNA4 994 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 KRT73Q86Y46 540 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 IRF2BP1Q8IU81 584 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 VGLL2Q8N8G2 317 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 FSIP1Q8NA03 581 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 C2CD4AQ8NCU7 369 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 STON2Q8WXE9 905 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 MRGPRX4Q96LA9 322 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 FERMT1Q9BQL6 677 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 TEX13BQ9BXU2 312 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 INTS2Q9H0H0 1204 aaKnown RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 C1orf21Q9H246 121 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 ADAM7Q9H2U9 754 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 TP63Q9H3D4 680 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 RWDD1Q9H446 243 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 PRDM13Q9H4Q3 707 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 RMI1Q9H9A7 625 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 CFAP97Q9P2B7 532 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 SEC63Q9UGP8 760 aaKnown RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 EIF4G1Q04637 1599 aaKnown RBP2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 H7C4K7 107 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 F2RL2O00254 374 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 ZNF263O14978 683 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 PROM1O43490 865 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 TBX10O75333 385 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 MATN4O95460 622 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 F9P00740 461 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 NTRK1P04629 796 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 RARGP13631 454 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 LAG3P18627 525 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 MCM3P25205 808 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 TXKP42681 527 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 NT5C2P49902 561 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 LIG4P49917 911 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 ZNF41P51814 821 aaPredicted RBP2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 RAD23AP54725 363 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 UCP3P55916 312 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 KRT17Q04695 432 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 GPS1Q13098 491 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 PTK6Q13882 451 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 KRBOX4Q5JUW0 171 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 RRM2BQ7LG56 351 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 UBE3BQ7Z3V4 1068 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 PIWIL3Q7Z3Z3 882 aaKnown RBP2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 LYSMD2Q8IV50 215 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 WDTC1Q8N5D0 677 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 DCBLD1Q8N8Z6 715 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 OR1N1Q8NGS0 311 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 KIF18AQ8NI77 898 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 BICD2Q8TD16 824 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 NCSTNQ92542 709 aa2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms