RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 WHAMMQ8TF30 809 aa16.1■□□□□ 0.17
LIMS3-201ENST00000437679 FBXO32Q969P5 355 aa16.1■□□□□ 0.17
LIMS3-201ENST00000437679 MSANTD3Q96H12 275 aa16.1■□□□□ 0.17
LIMS3-201ENST00000437679 ZFYVE19Q96K21 471 aa16.1■□□□□ 0.17
LIMS3-201ENST00000437679 HEXIM2Q96MH2 286 aaKnown RBP16.1■□□□□ 0.17
LIMS3-201ENST00000437679 CYP2S1Q96SQ9 504 aa16.1■□□□□ 0.17
LIMS3-201ENST00000437679 C8orf33Q9H7E9 229 aaPredicted RBP16.1■□□□□ 0.17
LIMS3-201ENST00000437679 COMMD8Q9NX08 183 aa16.1■□□□□ 0.17
LIMS3-201ENST00000437679 GCNT4Q9P109 453 aa16.1■□□□□ 0.17
LIMS3-201ENST00000437679 C2orf78A6NCI8 922 aa16.09■□□□□ 0.17
LIMS3-201ENST00000437679 ZNF840PA6NDX5 716 aa16.09■□□□□ 0.17
LIMS3-201ENST00000437679 P4HA2O15460 535 aa16.09■□□□□ 0.17
LIMS3-201ENST00000437679 TBXAS1P24557 533 aaPredicted RBP16.09■□□□□ 0.17
LIMS3-201ENST00000437679 SLC5A3P53794 718 aa16.09■□□□□ 0.17
LIMS3-201ENST00000437679 MLLT6P55198 1093 aaPredicted RBP16.09■□□□□ 0.17
LIMS3-201ENST00000437679 MARSP56192 900 aaKnown RBP16.09■□□□□ 0.17
LIMS3-201ENST00000437679 NHLH1Q02575 133 aa16.09■□□□□ 0.17
LIMS3-201ENST00000437679 LRMPQ12912 555 aa16.09■□□□□ 0.17
LIMS3-201ENST00000437679 CUL2Q13617 745 aa16.09■□□□□ 0.17
LIMS3-201ENST00000437679 C1orf228Q6PIY5 440 aa16.09■□□□□ 0.17
LIMS3-201ENST00000437679 TRIM59Q8IWR1 403 aa16.09■□□□□ 0.17
LIMS3-201ENST00000437679 TTC16Q8NEE8 873 aa16.09■□□□□ 0.17
LIMS3-201ENST00000437679 OVCA2Q8WZ82 227 aa16.09■□□□□ 0.17
LIMS3-201ENST00000437679 FAM3CQ92520 227 aa16.09■□□□□ 0.17
LIMS3-201ENST00000437679 NT5C1BQ96P26 610 aa16.09■□□□□ 0.17
LIMS3-201ENST00000437679 SLC22A12Q96S37 553 aa16.09■□□□□ 0.17
LIMS3-201ENST00000437679 SMOQ99835 787 aa16.09■□□□□ 0.17
LIMS3-201ENST00000437679 ARID3AQ99856 593 aa16.09■□□□□ 0.17
LIMS3-201ENST00000437679 CSNK1G1Q9HCP0 422 aa16.09■□□□□ 0.17
LIMS3-201ENST00000437679 GKN1Q9NS71 199 aa16.09■□□□□ 0.17
LIMS3-201ENST00000437679 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.09■□□□□ 0.17
LIMS3-201ENST00000437679 COL4A3Q01955 1670 aa16.08■□□□□ 0.17
LIMS3-201ENST00000437679 TNFRSF10BO14763 440 aa16.08■□□□□ 0.16
LIMS3-201ENST00000437679 BEST1O76090 585 aa16.08■□□□□ 0.16
LIMS3-201ENST00000437679 TARSP26639 723 aaKnown RBP16.08■□□□□ 0.16
LIMS3-201ENST00000437679 KCNH2Q12809 1159 aa16.08■□□□□ 0.16
LIMS3-201ENST00000437679 MTF1Q14872 753 aa16.08■□□□□ 0.16
LIMS3-201ENST00000437679 TPD52L1Q16890 204 aaPredicted RBP16.08■□□□□ 0.16
LIMS3-201ENST00000437679 CREBRFQ8IUR6 639 aa16.08■□□□□ 0.16
LIMS3-201ENST00000437679 ZMIZ2Q8NF64 920 aa16.08■□□□□ 0.16
LIMS3-201ENST00000437679 SCAMP5Q8TAC9 235 aa16.08■□□□□ 0.16
LIMS3-201ENST00000437679 TMEM176AQ96HP8 235 aa16.08■□□□□ 0.16
LIMS3-201ENST00000437679 FBXO44Q9H4M3 255 aa16.08■□□□□ 0.16
LIMS3-201ENST00000437679 GTSE1Q9NYZ3 720 aa16.08■□□□□ 0.16
LIMS3-201ENST00000437679 IL37Q9NZH6 218 aa16.08■□□□□ 0.16
LIMS3-201ENST00000437679 DACH1Q9UI36 760 aa16.08■□□□□ 0.16
LIMS3-201ENST00000437679 NDRG2Q9UN36 371 aaKnown RBP16.08■□□□□ 0.16
LIMS3-201ENST00000437679 ARHGAP26Q9UNA1 814 aa16.08■□□□□ 0.16
LIMS3-201ENST00000437679 MTF2Q9Y483 593 aaPredicted RBP16.08■□□□□ 0.16
LIMS3-201ENST00000437679 COL4A2P08572 1712 aa16.08■□□□□ 0.16
LIMS3-201ENST00000437679 H0Y858 1186 aa16.07■□□□□ 0.16
LIMS3-201ENST00000437679 AFPP02771 609 aaKnown RBP16.07■□□□□ 0.16
LIMS3-201ENST00000437679 MAGEA9P43362 315 aa16.07■□□□□ 0.16
LIMS3-201ENST00000437679 RAD23BP54727 409 aa16.07■□□□□ 0.16
LIMS3-201ENST00000437679 PDGFRLQ15198 375 aa16.07■□□□□ 0.16
LIMS3-201ENST00000437679 ZNF77Q15935 545 aa16.07■□□□□ 0.16
LIMS3-201ENST00000437679 ITPRIPL2Q3MIP1 535 aa16.07■□□□□ 0.16
LIMS3-201ENST00000437679 PPP1R26Q5T8A7 1209 aaPredicted RBP16.07■□□□□ 0.16
LIMS3-201ENST00000437679 CLEC20AQ6ZU45 233 aa16.07■□□□□ 0.16
LIMS3-201ENST00000437679 RALGPS2Q86X27 583 aaPredicted RBP16.07■□□□□ 0.16
LIMS3-201ENST00000437679 SLC4A11Q8NBS3 891 aa16.07■□□□□ 0.16
LIMS3-201ENST00000437679 TTC8Q8TAM2 541 aa16.07■□□□□ 0.16
LIMS3-201ENST00000437679 SH3RF2Q8TEC5 729 aa16.07■□□□□ 0.16
LIMS3-201ENST00000437679 ATOH1Q92858 354 aaPredicted RBP16.07■□□□□ 0.16
LIMS3-201ENST00000437679 JAKMIP2Q96AA8 810 aa16.07■□□□□ 0.16
LIMS3-201ENST00000437679 FAM83CQ9BQN1 747 aa16.07■□□□□ 0.16
LIMS3-201ENST00000437679 DLGAP2Q9P1A6 1054 aa16.07■□□□□ 0.16
LIMS3-201ENST00000437679 CHORDC1Q9UHD1 332 aaPredicted RBP16.07■□□□□ 0.16
LIMS3-201ENST00000437679 KIF26AQ9ULI4 1882 aaPredicted RBP16.06■□□□□ 0.16
LIMS3-201ENST00000437679 TCF3P15923 654 aa16.06■□□□□ 0.16
LIMS3-201ENST00000437679 IFNAR2P48551 515 aa16.06■□□□□ 0.16
LIMS3-201ENST00000437679 SLC7A9P82251 487 aa16.06■□□□□ 0.16
LIMS3-201ENST00000437679 TNK2Q07912 1038 aa16.06■□□□□ 0.16
LIMS3-201ENST00000437679 USP4Q13107 963 aa16.06■□□□□ 0.16
LIMS3-201ENST00000437679 HECTD3Q5T447 861 aa16.06■□□□□ 0.16
LIMS3-201ENST00000437679 PPM1KQ8N3J5 372 aa16.06■□□□□ 0.16
LIMS3-201ENST00000437679 EHBP1Q8NDI1 1231 aa16.06■□□□□ 0.16
LIMS3-201ENST00000437679 CLDN23Q96B33 292 aa16.06■□□□□ 0.16
LIMS3-201ENST00000437679 CNOT6LQ96LI5 555 aaKnown RBP16.06■□□□□ 0.16
LIMS3-201ENST00000437679 DUSP16Q9BY84 665 aa16.06■□□□□ 0.16
LIMS3-201ENST00000437679 EBF3Q9H4W6 596 aa16.06■□□□□ 0.16
LIMS3-201ENST00000437679 PNPLA8Q9NP80 782 aa16.06■□□□□ 0.16
LIMS3-201ENST00000437679 GMIPQ9P107 970 aa16.06■□□□□ 0.16
LIMS3-201ENST00000437679 CACNA1IQ9P0X4 2223 aa16.06■□□□□ 0.16
LIMS3-201ENST00000437679 HELZP42694 1942 aaKnown RBP16.06■□□□□ 0.16
LIMS3-201ENST00000437679 FAM92AA1XBS5 289 aa16.05■□□□□ 0.16
LIMS3-201ENST00000437679 SHISA7A6NL88 538 aa16.05■□□□□ 0.16
LIMS3-201ENST00000437679 SPECC1L-ADORA2AF8WAN1 911 aa16.05■□□□□ 0.16
LIMS3-201ENST00000437679 OAS1P00973 400 aaKnown RBP16.05■□□□□ 0.16
LIMS3-201ENST00000437679 MBL2P11226 248 aaPredicted RBP16.05■□□□□ 0.16
LIMS3-201ENST00000437679 CTHP32929 405 aa16.05■□□□□ 0.16
LIMS3-201ENST00000437679 SOX9P48436 509 aa16.05■□□□□ 0.16
LIMS3-201ENST00000437679 SLC8A3P57103 927 aa16.05■□□□□ 0.16
LIMS3-201ENST00000437679 RUNX3Q13761 415 aa16.05■□□□□ 0.16
LIMS3-201ENST00000437679 ANGPT1Q15389 498 aa16.05■□□□□ 0.16
LIMS3-201ENST00000437679 DPCR1Q3MIW9 517 aa16.05■□□□□ 0.16
LIMS3-201ENST00000437679 SGO2Q562F6 1265 aa16.05■□□□□ 0.16
LIMS3-201ENST00000437679 SNX30Q5VWJ9 437 aa16.05■□□□□ 0.16
LIMS3-201ENST00000437679 ARHGAP17Q68EM7 881 aa16.05■□□□□ 0.16
LIMS3-201ENST00000437679 TRIM68Q6AZZ1 485 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms