RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 ANKMY2Q8IV38 441 aa14.27□□□□□ -0.12
COL6A3-207ENST00000433762 MAP7D3Q8IWC1 876 aa14.27□□□□□ -0.12
COL6A3-207ENST00000433762 UNC45BQ8IWX7 931 aa14.27□□□□□ -0.12
COL6A3-207ENST00000433762 TRIM42Q8IWZ5 723 aa14.27□□□□□ -0.12
COL6A3-207ENST00000433762 KIAA0319LQ8IZA0 1049 aa14.27□□□□□ -0.12
COL6A3-207ENST00000433762 TBCBQ99426 244 aa14.27□□□□□ -0.12
COL6A3-207ENST00000433762 TRIM55Q9BYV6 548 aa14.27□□□□□ -0.12
COL6A3-207ENST00000433762 SPATC1LQ9H0A9 340 aa14.27□□□□□ -0.12
COL6A3-207ENST00000433762 CDT1Q9H211 546 aa14.27□□□□□ -0.12
COL6A3-207ENST00000433762 RNPEPL1Q9HAU8 725 aa14.27□□□□□ -0.12
COL6A3-207ENST00000433762 MTO1Q9Y2Z2 717 aaKnown RBP14.27□□□□□ -0.12
COL6A3-207ENST00000433762 RALGAPA2Q2PPJ7 1873 aa14.27□□□□□ -0.12
COL6A3-207ENST00000433762 LUC7L3O95232 432 aaKnown RBP14.27□□□□□ -0.13
COL6A3-207ENST00000433762 SRGAP2CP0DJJ0 459 aa14.27□□□□□ -0.13
COL6A3-207ENST00000433762 T-ENOLP0DO92 83 aa14.27□□□□□ -0.13
COL6A3-207ENST00000433762 ETV4P43268 484 aa14.27□□□□□ -0.13
COL6A3-207ENST00000433762 GPD2P43304 727 aa14.27□□□□□ -0.13
COL6A3-207ENST00000433762 MBTD1Q05BQ5 628 aa14.27□□□□□ -0.13
COL6A3-207ENST00000433762 SCARA3Q6AZY7 606 aa14.27□□□□□ -0.13
COL6A3-207ENST00000433762 SCARA5Q6ZMJ2 495 aa14.27□□□□□ -0.13
COL6A3-207ENST00000433762 SH2D5Q6ZV89 423 aa14.27□□□□□ -0.13
COL6A3-207ENST00000433762 CXorf38Q8TB03 319 aa14.27□□□□□ -0.13
COL6A3-207ENST00000433762 TCP10LQ8TDR4 215 aa14.27□□□□□ -0.13
COL6A3-207ENST00000433762 SMARCAD1Q9H4L7 1026 aa14.27□□□□□ -0.13
COL6A3-207ENST00000433762 MANSC1Q9H8J5 431 aa14.27□□□□□ -0.13
COL6A3-207ENST00000433762 ZFP69BQ9UJL9 534 aa14.27□□□□□ -0.13
COL6A3-207ENST00000433762 OTOFQ9HC10 1997 aa14.27□□□□□ -0.13
COL6A3-207ENST00000433762 MICAL2O94851 1124 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 MT-ND3P03897 115 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 GPD1P21695 349 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 CALB2P22676 271 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 ZNF200P98182 395 aaPredicted RBP14.26□□□□□ -0.13
COL6A3-207ENST00000433762 ACCSLQ4AC99 568 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 C1orf127Q8N9H9 656 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 RAB3IL1Q8TBN0 382 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 SPATA18Q8TC71 538 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 SPOCK2Q92563 424 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 ACSF2Q96CM8 615 aaPredicted RBP14.26□□□□□ -0.13
COL6A3-207ENST00000433762 STK38LQ9Y2H1 464 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 IKBKGQ9Y6K9 419 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 SETSIPP0DME0 302 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 ADRA1DP25100 572 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 DYNLT1P63172 113 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 KRT72Q14CN4 511 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 DBN1Q16643 649 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 CTC1Q2NKJ3 1217 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 BBS9Q3SYG4 887 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 BOLA3Q53S33 107 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 GPATCH11Q8N954 259 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 MCUQ8NE86 351 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 ADPGKQ9BRR6 497 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 SLC5A4Q9NY91 659 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 BTBD7Q9P203 1132 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 L3MBTL1Q9Y468 752 aa14.26□□□□□ -0.13
COL6A3-207ENST00000433762 GOLGB1Q14789 3259 aaKnown RBP14.26□□□□□ -0.13
COL6A3-207ENST00000433762 BCLAF3A2AJT9 711 aaKnown RBP14.25□□□□□ -0.13
COL6A3-207ENST00000433762 C2CD4BA6NLJ0 364 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 NOP56O00567 594 aaKnown RBP14.25□□□□□ -0.13
COL6A3-207ENST00000433762 INHBAP08476 426 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 PHKA2P46019 1235 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 SNX16P57768 344 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 SMTNL2Q2TAL5 461 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 LGSNQ5TDP6 509 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 LCLAT1Q6UWP7 414 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 CLNKQ7Z7G1 428 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 TBC1D10AQ9BXI6 508 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 SDCBP2Q9H190 292 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 MMADHCQ9H3L0 296 aaPredicted RBP14.25□□□□□ -0.13
COL6A3-207ENST00000433762 IFT122Q9HBG6 1241 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 CNTN3Q9P232 1028 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 NXF1Q9UBU9 619 aaKnown RBP14.25□□□□□ -0.13
COL6A3-207ENST00000433762 ITGA11Q9UKX5 1188 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 BARX2Q9UMQ3 279 aaPredicted RBP14.25□□□□□ -0.13
COL6A3-207ENST00000433762 TRIM33Q9UPN9 1127 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 DICER1Q9UPY3 1922 aaKnown RBP14.25□□□□□ -0.13
COL6A3-207ENST00000433762 GOLGA8MH3BSY2 632 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 LPXNO60711 386 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 FGFR1P11362 822 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 DESP17661 470 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 TARSP26639 723 aaKnown RBP14.25□□□□□ -0.13
COL6A3-207ENST00000433762 GCKP35557 465 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 CLNS1AP54105 237 aaKnown RBP14.25□□□□□ -0.13
COL6A3-207ENST00000433762 PTK7Q13308 1070 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 PRKD1Q15139 912 aaPredicted RBP14.25□□□□□ -0.13
COL6A3-207ENST00000433762 ZNF484Q5JVG2 852 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 HP1BP3Q5SSJ5 553 aaPredicted RBP14.25□□□□□ -0.13
COL6A3-207ENST00000433762 TTC39BQ5VTQ0 682 aaPredicted RBP14.25□□□□□ -0.13
COL6A3-207ENST00000433762 CYP4V2Q6ZWL3 525 aaPredicted RBP14.25□□□□□ -0.13
COL6A3-207ENST00000433762 SLC26A11Q86WA9 606 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 FAM71DQ8N9W8 422 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 STK32AQ8WU08 396 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 MTBPQ96DY7 904 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 RNF157Q96PX1 679 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 TSSK1BQ9BXA7 367 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 ELOVL4Q9GZR5 314 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 HAO1Q9UJM8 370 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 C2CD2Q9Y426 696 aa14.25□□□□□ -0.13
COL6A3-207ENST00000433762 TCRBV9S1A1TA0A576 114 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 INO80B-WBP1J3KQ70 363 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 M0QYV0 167 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms