RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 RAPGEF1Q13905 1077 aa13.14□□□□□ -0.31
USP40-205ENST00000430158 GOLGA7BQ2TAP0 167 aa13.14□□□□□ -0.31
USP40-205ENST00000430158 PABPC1LQ4VXU2 614 aaKnown RBP13.14□□□□□ -0.31
USP40-205ENST00000430158 RAB41Q5JT25 222 aa13.14□□□□□ -0.31
USP40-205ENST00000430158 ITIH5Q86UX2 942 aa13.14□□□□□ -0.31
USP40-205ENST00000430158 SLC47A2Q86VL8 602 aa13.14□□□□□ -0.31
USP40-205ENST00000430158 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.14□□□□□ -0.31
USP40-205ENST00000430158 WDTC1Q8N5D0 677 aa13.14□□□□□ -0.31
USP40-205ENST00000430158 LEMD2Q8NC56 503 aa13.14□□□□□ -0.31
USP40-205ENST00000430158 SCAMP5Q8TAC9 235 aa13.14□□□□□ -0.31
USP40-205ENST00000430158 SLC35F5Q8WV83 523 aa13.14□□□□□ -0.31
USP40-205ENST00000430158 MYADMQ96S97 322 aa13.14□□□□□ -0.31
USP40-205ENST00000430158 EDEM3Q9BZQ6 932 aa13.14□□□□□ -0.31
USP40-205ENST00000430158 PIDD1Q9HB75 910 aa13.14□□□□□ -0.31
USP40-205ENST00000430158 NOCTQ9UK39 431 aaKnown RBP13.14□□□□□ -0.31
USP40-205ENST00000430158 PCDHGC3Q9UN70 934 aa13.14□□□□□ -0.31
USP40-205ENST00000430158 USP3Q9Y6I4 520 aa13.14□□□□□ -0.31
USP40-205ENST00000430158 TRIOO75962 3097 aa13.14□□□□□ -0.31
USP40-205ENST00000430158 F5P12259 2224 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 LOC730098B7Z3J9 87 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 ZDHHC11BP0C7U3 371 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 CEBPBP17676 345 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 CHRNB2P17787 502 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 FSHRP23945 695 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 GNA15P30679 374 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 SOX5P35711 763 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 USP8P40818 1118 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 PGFP49763 221 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 KIF11P52732 1056 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 ZP2Q05996 745 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 STILQ15468 1287 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 E4F1Q66K89 784 aaPredicted RBP13.13□□□□□ -0.31
USP40-205ENST00000430158 DENND1BQ6P3S1 775 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 DENND5BQ6ZUT9 1274 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 IRF2BP2Q7Z5L9 587 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 PIGZQ86VD9 579 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 NUP93Q8N1F7 819 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 ELMOD1Q8N336 334 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 UBA3Q8TBC4 463 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 SYT11Q9BT88 431 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 DNAI2Q9GZS0 605 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 ASAH2Q9NR71 780 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 COMMD8Q9NX08 183 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 PRKAG3Q9UGI9 489 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 CYTH4Q9UIA0 394 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 MYO6Q9UM54 1294 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 USTQ9Y2C2 406 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 ITIH6Q6UXX5 1313 aa13.13□□□□□ -0.31
USP40-205ENST00000430158 MYO16Q9Y6X6 1858 aa13.12□□□□□ -0.31
USP40-205ENST00000430158 A0A1W2PQJ5 194 aa13.12□□□□□ -0.31
USP40-205ENST00000430158 XPO1O14980 1071 aaKnown RBP13.12□□□□□ -0.31
USP40-205ENST00000430158 CYP11B1P15538 503 aa13.12□□□□□ -0.31
USP40-205ENST00000430158 GJA1P17302 382 aa13.12□□□□□ -0.31
USP40-205ENST00000430158 SSTR3P32745 418 aaPredicted RBP13.12□□□□□ -0.31
USP40-205ENST00000430158 PLA2G4AP47712 749 aa13.12□□□□□ -0.31
USP40-205ENST00000430158 SLC5A3P53794 718 aa13.12□□□□□ -0.31
USP40-205ENST00000430158 BCAT1P54687 386 aa13.12□□□□□ -0.31
USP40-205ENST00000430158 PTK2Q05397 1052 aa13.12□□□□□ -0.31
USP40-205ENST00000430158 BST2Q10589 180 aaKnown RBP13.12□□□□□ -0.31
USP40-205ENST00000430158 VEPH1Q14D04 833 aa13.12□□□□□ -0.31
USP40-205ENST00000430158 PMF1Q6P1K2 205 aa13.12□□□□□ -0.31
USP40-205ENST00000430158 BHLHA9Q7RTU4 235 aa13.12□□□□□ -0.31
USP40-205ENST00000430158 NOP9Q86U38 636 aaKnown RBP13.12□□□□□ -0.31
USP40-205ENST00000430158 VSTM4Q8IW00 320 aa13.12□□□□□ -0.31
USP40-205ENST00000430158 ADHFE1Q8IWW8 467 aa13.12□□□□□ -0.31
USP40-205ENST00000430158 NPAS3Q8IXF0 933 aa13.12□□□□□ -0.31
USP40-205ENST00000430158 EPS8L1Q8TE68 723 aa13.12□□□□□ -0.31
USP40-205ENST00000430158 KCTD13Q8WZ19 329 aa13.12□□□□□ -0.31
USP40-205ENST00000430158 SPOCK2Q92563 424 aa13.12□□□□□ -0.31
USP40-205ENST00000430158 FGF13Q92913 245 aa13.12□□□□□ -0.31
USP40-205ENST00000430158 SECISBP2LQ93073 1101 aaKnown RBP13.12□□□□□ -0.31
USP40-205ENST00000430158 ZSWIM3Q96MP5 696 aa13.12□□□□□ -0.31
USP40-205ENST00000430158 ANP32EQ9BTT0 268 aa13.12□□□□□ -0.31
USP40-205ENST00000430158 CD320Q9NPF0 282 aa13.12□□□□□ -0.31
USP40-205ENST00000430158 EPS15L1Q9UBC2 864 aa13.12□□□□□ -0.31
USP40-205ENST00000430158 NCANO14594 1321 aa13.12□□□□□ -0.31
USP40-205ENST00000430158 NUP210Q8TEM1 1887 aaPredicted RBP13.11□□□□□ -0.31
USP40-205ENST00000430158 C2CD4DB7Z1M9 353 aa13.11□□□□□ -0.31
USP40-205ENST00000430158 ZNF197O14709 1029 aa13.11□□□□□ -0.31
USP40-205ENST00000430158 THAP12O43422 761 aa13.11□□□□□ -0.31
USP40-205ENST00000430158 GFPT2O94808 682 aa13.11□□□□□ -0.31
USP40-205ENST00000430158 RTN3O95197 1032 aaPredicted RBP13.11□□□□□ -0.31
USP40-205ENST00000430158 GYPCP04921 128 aa13.11□□□□□ -0.31
USP40-205ENST00000430158 SETSIPP0DME0 302 aa13.11□□□□□ -0.31
USP40-205ENST00000430158 MYL4P12829 197 aa13.11□□□□□ -0.31
USP40-205ENST00000430158 TRIM21P19474 475 aaKnown RBP13.11□□□□□ -0.31
USP40-205ENST00000430158 ANXA13P27216 316 aa13.11□□□□□ -0.31
USP40-205ENST00000430158 GABRR2P28476 465 aa13.11□□□□□ -0.31
USP40-205ENST00000430158 CDH5P33151 784 aaPredicted RBP13.11□□□□□ -0.31
USP40-205ENST00000430158 STAT1P42224 750 aa13.11□□□□□ -0.31
USP40-205ENST00000430158 BPIFB4P59827 614 aa13.11□□□□□ -0.31
USP40-205ENST00000430158 TJAP1Q5JTD0 557 aa13.11□□□□□ -0.31
USP40-205ENST00000430158 STXBP5Q5T5C0 1151 aa13.11□□□□□ -0.31
USP40-205ENST00000430158 CYP4A22Q5TCH4 519 aa13.11□□□□□ -0.31
USP40-205ENST00000430158 SNX30Q5VWJ9 437 aa13.11□□□□□ -0.31
USP40-205ENST00000430158 PM20D1Q6GTS8 502 aa13.11□□□□□ -0.31
USP40-205ENST00000430158 PDZD4Q76G19 769 aaPredicted RBP13.11□□□□□ -0.31
USP40-205ENST00000430158 ZDHHC14Q8IZN3 488 aa13.11□□□□□ -0.31
USP40-205ENST00000430158 STK32AQ8WU08 396 aa13.11□□□□□ -0.31
USP40-205ENST00000430158 SLC20A1Q8WUM9 679 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms