RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 ATMINO43313 823 aaPredicted RBP11.1□□□□□ -0.63
TCOF1-204ENST00000427724 TSPAN3O60637 253 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 YWHAQP27348 245 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 ETFBP38117 255 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 KCNJ1P48048 391 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 PTENP60484 403 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 HP1BP3Q5SSJ5 553 aaPredicted RBP11.1□□□□□ -0.63
TCOF1-204ENST00000427724 MEI1Q5TIA1 1274 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 TPGS1Q6ZTW0 290 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 KIF2BQ8N4N8 673 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 EDEM1Q92611 657 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 STK33Q9BYT3 514 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 SLC25A13Q9UJS0 675 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 DNM1LO00429 736 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 BAG2O95816 211 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 GJA5P36382 358 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 TM4SF4P48230 202 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 SLC30A9Q6PML9 568 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 KDM7AQ6ZMT4 941 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 PRR23CQ6ZRP0 262 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 TSHZ1Q6ZSZ6 1077 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 MIPOL1Q8TD10 442 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 TAS1R2Q8TE23 839 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 PTPN18Q99952 460 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 TTPALQ9BTX7 342 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 MRPL42Q9Y6G3 142 aaKnown RBP11.1□□□□□ -0.63
TCOF1-204ENST00000427724 TPRP12270 2363 aaKnown RBP11.1□□□□□ -0.63
TCOF1-204ENST00000427724 M0QYT0 321 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 CA4P22748 312 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 RASSF2P50749 326 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 PABPC1LQ4VXU2 614 aaKnown RBP11.09□□□□□ -0.63
TCOF1-204ENST00000427724 RARS2Q5T160 578 aaKnown RBP11.09□□□□□ -0.63
TCOF1-204ENST00000427724 ABHD15Q6UXT9 468 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 ANO5Q75V66 913 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 SRRM1Q8IYB3 904 aaKnown RBP11.09□□□□□ -0.63
TCOF1-204ENST00000427724 FLCNQ8NFG4 579 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 ATP6V1E2Q96A05 226 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 TMEM117Q9H0C3 514 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 SARS2Q9NP81 518 aaKnown RBP11.09□□□□□ -0.63
TCOF1-204ENST00000427724 CDY1Q9Y6F8 540 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 OPHN1O60890 802 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 CHN1P15882 459 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 CHRNA3P32297 505 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 ARHGEF7Q14155 803 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 EFHC1Q5JVL4 640 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 TRIM72Q6ZMU5 477 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 SV2AQ7L0J3 742 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 CCDC110Q8TBZ0 833 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 CAVIN3Q969G5 261 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 BATF3Q9NR55 127 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 SCOCQ9UIL1 159 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 ASS1P00966 412 aaKnown RBP11.09□□□□□ -0.63
TCOF1-204ENST00000427724 SNHG28P0DPA3 235 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 EPHB2P29323 1055 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 TTMPQ5BVD1 217 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 SDHAF4Q5VUM1 108 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 LRRC55Q6ZSA7 311 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 PID1Q7Z2X4 250 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 ATP6V0D2Q8N8Y2 350 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 OR6P1Q8NGX9 317 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 SPIRE2Q8WWL2 714 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 SCYL1Q96KG9 808 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 TSR3Q9UJK0 312 aaKnown RBP11.09□□□□□ -0.63
TCOF1-204ENST00000427724 RWDD3Q9Y3V2 267 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 ALG6Q9Y672 507 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 FAM187AA6NFU0 413 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 TISP43B9A030 160 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 F5H5T6 163 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 SETSIPP0DME0 302 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 FOSL2P15408 326 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 ARL4DP49703 201 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 PDE1BQ01064 536 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 IL9RQ01113 521 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 KCNMA1Q12791 1236 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 TUSC3Q13454 348 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 BBS9Q3SYG4 887 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 GDF6Q6KF10 455 aaPredicted RBP11.09□□□□□ -0.63
TCOF1-204ENST00000427724 TTC23LQ6PF05 361 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 LRIG3Q6UXM1 1119 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 JAMLQ86YT9 394 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 LRRC8CQ8TDW0 803 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 CGRRF1Q99675 332 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 THAP2Q9H0W7 228 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 CDT1Q9H211 546 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 ECT2Q9H8V3 914 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 TLR8Q9NR97 1041 aaKnown RBP11.09□□□□□ -0.63
TCOF1-204ENST00000427724 VPS28Q9UK41 221 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 INTUQ9ULD6 942 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 L3MBTL1Q9Y468 752 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 ANGPTL3Q9Y5C1 460 aa11.09□□□□□ -0.63
TCOF1-204ENST00000427724 SLC16A3O15427 465 aaKnown RBP11.08□□□□□ -0.64
TCOF1-204ENST00000427724 PPARGP37231 505 aaPredicted RBP11.08□□□□□ -0.64
TCOF1-204ENST00000427724 SCTRP47872 440 aa11.08□□□□□ -0.64
TCOF1-204ENST00000427724 SMAD1Q15797 465 aaKnown RBP11.08□□□□□ -0.64
TCOF1-204ENST00000427724 NPAS4Q8IUM7 802 aa11.08□□□□□ -0.64
TCOF1-204ENST00000427724 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.08□□□□□ -0.64
TCOF1-204ENST00000427724 BAP1Q92560 729 aa11.08□□□□□ -0.64
TCOF1-204ENST00000427724 P3H4Q92791 437 aa11.08□□□□□ -0.64
TCOF1-204ENST00000427724 MCRS1Q96EZ8 462 aa11.08□□□□□ -0.64
TCOF1-204ENST00000427724 STAMBPL1Q96FJ0 436 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms