RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 KIF1CO43896 1103 aaKnown RBP9.03□□□□□ -0.96
USP40-203ENST00000427112 PFDN1O60925 122 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 TBX10O75333 385 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 ERBB2P04626 1255 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 GSTA1P08263 222 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 CALB2P22676 271 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 HSD17B4P51659 736 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 KRT76Q01546 638 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 CENPCQ03188 943 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 CAPSQ13938 189 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 PDE1CQ14123 709 aaPredicted RBP9.03□□□□□ -0.96
USP40-203ENST00000427112 PPM1JQ5JR12 505 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 RALGPS1Q5JS13 557 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 RNASEH2BQ5TBB1 312 aaKnown RBP9.03□□□□□ -0.96
USP40-203ENST00000427112 RGS9BPQ6ZS82 235 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 DENND5BQ6ZUT9 1274 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 TREML1Q86YW5 311 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 NDUFAF2Q8N183 169 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 SPATA6LQ8N4H0 392 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 TMEM35BQ8NCS4 154 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 DEPDC1BQ8WUY9 529 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 IWS1Q96ST2 819 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 ADPGKQ9BRR6 497 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 DEFB129Q9H1M3 183 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 SLC38A10Q9HBR0 1119 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 UBP1Q9NZI7 540 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 TAF1LQ8IZX4 1826 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 TMEM191CA6NGB0 347 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 NOP56O00567 594 aaKnown RBP9.03□□□□□ -0.96
USP40-203ENST00000427112 NVLO15381 856 aaKnown RBP9.03□□□□□ -0.96
USP40-203ENST00000427112 MT-CO1P00395 513 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 VTNP04004 478 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 HMGCRP04035 888 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 NFICP08651 508 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 PDGFRAP16234 1089 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 SERPINB4P48594 390 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 PSEN1P49768 467 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 CRYMQ14894 314 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 LPCAT4Q643R3 524 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 B3GNT9Q6UX72 402 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 DCLK2Q8N568 766 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 EXD1Q8NHP7 514 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 CLEC4CQ8WTT0 213 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 TRIM4Q9C037 500 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 MYOZ2Q9NPC6 264 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 PICK1Q9NRD5 415 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 ZFATQ9P243 1243 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 TRPC5Q9UL62 973 aaPredicted RBP9.03□□□□□ -0.96
USP40-203ENST00000427112 SLC4A7Q9Y6M7 1214 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 MCF2LO15068 1137 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 DGAT1O75907 488 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 ADORA2AP29274 412 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 ADORA2BP29275 332 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 CDKN2BP42772 138 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 IFRD2Q12894 506 aaPredicted RBP9.02□□□□□ -0.97
USP40-203ENST00000427112 RASA2Q15283 850 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 C1orf146Q5VVC0 180 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 ASRGL1Q7L266 308 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 ZBTB46Q86UZ6 589 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 TP53INP2Q8IXH6 220 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 TNS4Q8IZW8 715 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 C3orf20Q8ND61 904 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 GSTCDQ8NEC7 633 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 SLC26A7Q8TE54 656 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 PHF12Q96QT6 1004 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 C20orf27Q9GZN8 174 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 CYP39A1Q9NYL5 469 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 STK24Q9Y6E0 443 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 DCAF8L1A6NGE4 600 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 OPHN1O60890 802 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 KCNA3P22001 575 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 SERPINB6P35237 376 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 CCR10P46092 362 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 JAK3P52333 1124 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 BST1Q10588 318 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 PDK4Q16654 411 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 HSDL1Q3SXM5 330 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 GADL1Q6ZQY3 521 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 RCOR2Q8IZ40 523 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 PYROXD2Q8N2H3 581 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 CCNYQ8ND76 341 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 C7orf43Q8WVR3 580 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 TEKT4Q8WW24 435 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 SRPK1Q96SB4 655 aaKnown RBP9.02□□□□□ -0.97
USP40-203ENST00000427112 VPS11Q9H270 941 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 DHX35Q9H5Z1 703 aaKnown RBP9.02□□□□□ -0.97
USP40-203ENST00000427112 MINDY3Q9H8M7 445 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 TAS2R1Q9NYW7 299 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 HACL1Q9UJ83 578 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 GON4LQ3T8J9 2241 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 GOLGA4Q13439 2230 aaKnown RBP9.02□□□□□ -0.97
USP40-203ENST00000427112 PRR5-ARHGAP8B1AHC4 643 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 RNF8O76064 485 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 CYP1A1P04798 512 aaPredicted RBP9.02□□□□□ -0.97
USP40-203ENST00000427112 LCP1P13796 627 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 RFX1P22670 979 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 MMP8P22894 467 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 TCF7P36402 384 aaPredicted RBP9.02□□□□□ -0.97
USP40-203ENST00000427112 ARHGAP8P85298 464 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 GCNT1Q02742 428 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms