RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 HNRNPA1P09651 372 aaKnown RBP eCLIP10.63□□□□□ -0.71
CD44-207ENST00000425428 SPATA31D3P0C874 917 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 UNGP13051 313 aaPredicted RBP10.63□□□□□ -0.71
CD44-207ENST00000425428 ABCB4P21439 1286 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 YWHAQP27348 245 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 PPP3CCP48454 512 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 PSEN1P49768 467 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 RGS7P49802 495 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 TKTL1P51854 596 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 TWF1Q12792 350 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 ZNF268Q14587 947 aaPredicted RBP10.63□□□□□ -0.71
CD44-207ENST00000425428 DUSP6Q16828 381 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 DDR2Q16832 855 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 EFHC1Q5JVL4 640 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 DNAJC24Q6P3W2 148 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 EP400NLQ6ZTU2 488 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 SPATA31D4Q6ZUB0 917 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 SPRED2Q7Z698 418 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 RHOT2Q8IXI1 618 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 LEMD2Q8NC56 503 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 STKLD1Q8NE28 680 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 SLC30A5Q8TAD4 765 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 SMOQ99835 787 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 C11orf70Q9BRQ4 267 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 ISCUQ9H1K1 167 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 ZDHHC7Q9NXF8 308 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 MAGED2Q9UNF1 606 aaPredicted RBP10.63□□□□□ -0.71
CD44-207ENST00000425428 MYO7AQ13402 2215 aa10.63□□□□□ -0.71
CD44-207ENST00000425428 PER2O15055 1255 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 ADAM12O43184 909 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 LCA5LO95447 670 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 ZBED1O96006 694 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 RALAP11233 206 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 MMP8P22894 467 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 DEKP35659 375 aaKnown RBP10.62□□□□□ -0.71
CD44-207ENST00000425428 NOP2P46087 812 aaKnown RBP10.62□□□□□ -0.71
CD44-207ENST00000425428 PLXNA3P51805 1871 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 CDR1P51861 262 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 CCZ1BP86790 482 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 CCZ1P86791 482 aaPredicted RBP10.62□□□□□ -0.71
CD44-207ENST00000425428 ADIGQ0VDE8 80 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 PKDCCQ504Y2 493 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 CYP4A22Q5TCH4 519 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 PMF1Q6P1K2 205 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 LLGL2Q6P1M3 1020 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 MMS22LQ6ZRQ5 1243 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 PAQR9Q6ZVX9 377 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 TMEM110Q86TL2 294 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 MCOLN2Q8IZK6 566 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 IRGQQ8WZA9 623 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 FBXO32Q969P5 355 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 FAM149B1Q96BN6 582 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 ZNF830Q96NB3 372 aaPredicted RBP10.62□□□□□ -0.71
CD44-207ENST00000425428 CDK5RAP1Q96SZ6 601 aaKnown RBP10.62□□□□□ -0.71
CD44-207ENST00000425428 KCNK16Q96T55 309 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 NACA2Q9H009 215 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 SFXN1Q9H9B4 322 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 TLR8Q9NR97 1041 aaKnown RBP10.62□□□□□ -0.71
CD44-207ENST00000425428 TMEM51Q9NW97 253 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 CTTNBP2NLQ9P2B4 639 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 MYO1AQ9UBC5 1043 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 CNOT8Q9UFF9 292 aaKnown RBP10.62□□□□□ -0.71
CD44-207ENST00000425428 YIPF1Q9Y548 306 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 ZNF638Q14966 1978 aaKnown RBP10.62□□□□□ -0.71
CD44-207ENST00000425428 MYO16Q9Y6X6 1858 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 SLC38A8A6NNN8 435 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 E5RJQ4 531 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 RFXAPO00287 272 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 ZMYND10O75800 440 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 ABL1P00519 1130 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 TMEM253P0C7T8 217 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 PTPN2P17706 415 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 HOXA9P31269 272 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 VAV2P52735 878 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 SLC5A3P53794 718 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 GALCP54803 685 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 CAMK1Q14012 370 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 ASTE1Q2TB18 679 aaPredicted RBP10.62□□□□□ -0.71
CD44-207ENST00000425428 FAM102AQ5T9C2 384 aaPredicted RBP10.62□□□□□ -0.71
CD44-207ENST00000425428 BTBD8Q5XKL5 378 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 CES5AQ6NT32 575 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 RAD9BQ6WBX8 426 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 MICALL1Q8N3F8 863 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 GIPC2Q8TF65 315 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 RNF139Q8WU17 664 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 OVCA2Q8WZ82 227 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 PCDHB18PQ96TA0 734 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 ZSWIM1Q9BR11 485 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 SYT11Q9BT88 431 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 SLC4A5Q9BY07 1137 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 RHOBTB2Q9BYZ6 727 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 ASAH2Q9NR71 780 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 TRPM5Q9NZQ8 1165 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 UVRAGQ9P2Y5 699 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 HCFC2Q9Y5Z7 792 aa10.62□□□□□ -0.71
CD44-207ENST00000425428 PATJQ8NI35 1801 aa10.61□□□□□ -0.71
CD44-207ENST00000425428 GOLGA8SH3BPF8 625 aa10.61□□□□□ -0.71
CD44-207ENST00000425428 ZNF197O14709 1029 aa10.61□□□□□ -0.71
CD44-207ENST00000425428 HSF2BPO75031 334 aa10.61□□□□□ -0.71
CD44-207ENST00000425428 SEC24AO95486 1093 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms