RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 PSMC6P62333 389 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 SCAIQ8N9R8 606 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 C3orf20Q8ND61 904 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 C1orf54Q8WWF1 131 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 PPP1R16AQ96I34 528 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 REXO5Q96IC2 774 aaKnown RBP7.09□□□□□ -1.27
SCN1A-204ENST00000423058 ZCWPW1Q9H0M4 648 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 DCP1AQ9NPI6 582 aaPredicted RBP7.09□□□□□ -1.27
SCN1A-204ENST00000423058 KIAA1257Q9ULG3 409 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 STARD13Q9Y3M8 1113 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 TMEM114B3SHH9 223 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 RGS5O15539 181 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 CYP26A1O43174 497 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 OR6A2O95222 327 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 THP07101 528 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 CYP2A6P11509 494 aaPredicted RBP7.09□□□□□ -1.27
SCN1A-204ENST00000423058 ITGALP20701 1170 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 PBLDP30039 288 aaPredicted RBP7.09□□□□□ -1.27
SCN1A-204ENST00000423058 KDSRQ06136 332 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 CYP20A1Q6UW02 462 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 GPT2Q8TD30 523 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 RNPC3Q96LT9 517 aaKnown RBP7.09□□□□□ -1.27
SCN1A-204ENST00000423058 ETNK1Q9HBU6 452 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 PIH1D3Q9NQM4 214 aaKnown RBP7.09□□□□□ -1.27
SCN1A-204ENST00000423058 KIF20BQ96Q89 1820 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 CRB1P82279 1406 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 MYMKA6NI61 221 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 SNRPAP09012 282 aaKnown RBP7.09□□□□□ -1.27
SCN1A-204ENST00000423058 PRKCEQ02156 737 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 PMF1Q6P1K2 205 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 ANKMY2Q8IV38 441 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 WDR36Q8NI36 951 aaKnown RBP7.09□□□□□ -1.27
SCN1A-204ENST00000423058 BLOC1S5Q8TDH9 187 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 STARD8Q92502 1023 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 MED8Q96G25 268 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 VIPAS39Q9H9C1 493 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 TLR7Q9NYK1 1049 aaKnown RBP7.09□□□□□ -1.27
SCN1A-204ENST00000423058 NEU2Q9Y3R4 380 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 TRPM1Q7Z4N2 1603 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 IGSF1Q8N6C5 1336 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 CDH16O75309 829 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 FBXO21O94952 628 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 HNRNPCP07910 306 aaKnown RBP eCLIP7.09□□□□□ -1.27
SCN1A-204ENST00000423058 BTKQ06187 659 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 NKX1-1Q15270 411 aaPredicted RBP7.09□□□□□ -1.27
SCN1A-204ENST00000423058 PGS1Q32NB8 556 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 C3orf62Q6ZUJ4 267 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 BSNDQ8WZ55 320 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 SIKE1Q9BRV8 207 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 CIPCQ9C0C6 399 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 NDOR1Q9UHB4 597 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 PNMA8BQ9ULN7 279 aaPredicted RBP7.09□□□□□ -1.27
SCN1A-204ENST00000423058 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.09□□□□□ -1.27
SCN1A-204ENST00000423058 TGM2P21980 687 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 MAPKAPK2P49137 400 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 CAPRIN2Q6IMN6 1127 aaKnown RBP7.09□□□□□ -1.27
SCN1A-204ENST00000423058 CCNJLQ8IV13 435 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 SPACA7Q96KW9 195 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 RPRD1AQ96P16 312 aaPredicted RBP7.09□□□□□ -1.27
SCN1A-204ENST00000423058 SH3GL2Q99962 352 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 SH3BP4Q9P0V3 963 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 ZMYND8Q9ULU4 1186 aaPredicted RBP7.09□□□□□ -1.27
SCN1A-204ENST00000423058 UBQLN1Q9UMX0 589 aaKnown RBP7.09□□□□□ -1.27
SCN1A-204ENST00000423058 PCDHB2Q9Y5E7 798 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 TCHHQ07283 1943 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 A2ML1A8K2U0 1454 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 COX10Q12887 443 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 MAD2L1Q13257 205 aaPredicted RBP7.09□□□□□ -1.27
SCN1A-204ENST00000423058 PACS1Q6VY07 963 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 C11orf57Q6ZUT1 292 aaPredicted RBP7.09□□□□□ -1.27
SCN1A-204ENST00000423058 STAG2Q8N3U4 1231 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 CPA5Q8WXQ8 436 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 OSBPL1AQ9BXW6 950 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 SERHL2Q9H4I8 314 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 LY9Q9HBG7 655 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 NPHS2Q9NP85 383 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 SERHLQ9NQF3 203 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 GGA3Q9NZ52 723 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 VPS28Q9UK41 221 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 SNX8Q9Y5X2 465 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.09□□□□□ -1.27
SCN1A-204ENST00000423058 RNF17Q9BXT8 1623 aaKnown RBP7.09□□□□□ -1.28
SCN1A-204ENST00000423058 TCP11X1B4DZS4 312 aa7.09□□□□□ -1.28
SCN1A-204ENST00000423058 ENTPD3O75355 529 aa7.09□□□□□ -1.28
SCN1A-204ENST00000423058 RTN3O95197 1032 aaPredicted RBP7.09□□□□□ -1.28
SCN1A-204ENST00000423058 RAD23BP54727 409 aa7.09□□□□□ -1.28
SCN1A-204ENST00000423058 PTK7Q13308 1070 aa7.09□□□□□ -1.28
SCN1A-204ENST00000423058 BAATQ14032 418 aaPredicted RBP7.09□□□□□ -1.28
SCN1A-204ENST00000423058 ALX1Q15699 326 aa7.09□□□□□ -1.28
SCN1A-204ENST00000423058 PROSER3Q2NL68 480 aa7.09□□□□□ -1.28
SCN1A-204ENST00000423058 NDUFAF6Q330K2 333 aa7.09□□□□□ -1.28
SCN1A-204ENST00000423058 C11orf74Q86VG3 221 aa7.09□□□□□ -1.28
SCN1A-204ENST00000423058 CCDC103Q8IW40 242 aa7.09□□□□□ -1.28
SCN1A-204ENST00000423058 RGL4Q8IZJ4 473 aa7.09□□□□□ -1.28
SCN1A-204ENST00000423058 RIN3Q8TB24 985 aa7.09□□□□□ -1.28
SCN1A-204ENST00000423058 GLMNQ92990 594 aa7.09□□□□□ -1.28
SCN1A-204ENST00000423058 CRELD1Q96HD1 420 aa7.09□□□□□ -1.28
SCN1A-204ENST00000423058 CLCC1Q96S66 551 aa7.09□□□□□ -1.28
SCN1A-204ENST00000423058 RAD21L1Q9H4I0 556 aa7.09□□□□□ -1.28
SCN1A-204ENST00000423058 ZNF232Q9UNY5 417 aa7.09□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms