RNA–Protein interactions for RNA: ENST00000420503.1

LINC00339-203, long intergenic non-protein coding RNA 339, humanhuman

TSL 3

Gene LINC00339, Length 771 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-203ENST00000420503 WDFY3Q8IZQ1 3526 aa13.76□□□□□ -0.21
LINC00339-203ENST00000420503 SPAARA0A1B0GVQ0 90 aa13.75□□□□□ -0.21
LINC00339-203ENST00000420503 KHNYNO15037 678 aaKnown RBP13.75□□□□□ -0.21
LINC00339-203ENST00000420503 EIF5BO60841 1220 aaKnown RBP13.75□□□□□ -0.21
LINC00339-203ENST00000420503 NFATC1O95644 943 aa13.75□□□□□ -0.21
LINC00339-203ENST00000420503 CST3P01034 146 aaPredicted RBP13.75□□□□□ -0.21
LINC00339-203ENST00000420503 TCF3P15923 654 aa13.75□□□□□ -0.21
LINC00339-203ENST00000420503 GAP43P17677 238 aa13.75□□□□□ -0.21
LINC00339-203ENST00000420503 GARTP22102 1010 aa13.75□□□□□ -0.21
LINC00339-203ENST00000420503 PCSK1P29120 753 aa13.75□□□□□ -0.21
LINC00339-203ENST00000420503 LHX1P48742 406 aa13.75□□□□□ -0.21
LINC00339-203ENST00000420503 PGFP49763 221 aa13.75□□□□□ -0.21
LINC00339-203ENST00000420503 RESTQ13127 1097 aa13.75□□□□□ -0.21
LINC00339-203ENST00000420503 RHBDF2Q6PJF5 856 aa13.75□□□□□ -0.21
LINC00339-203ENST00000420503 DENND5BQ6ZUT9 1274 aa13.75□□□□□ -0.21
LINC00339-203ENST00000420503 GPD1LQ8N335 351 aa13.75□□□□□ -0.21
LINC00339-203ENST00000420503 PHTF2Q8N3S3 785 aa13.75□□□□□ -0.21
LINC00339-203ENST00000420503 CACTINQ8WUQ7 758 aaKnown RBP13.75□□□□□ -0.21
LINC00339-203ENST00000420503 HMGB4Q8WW32 186 aa13.75□□□□□ -0.21
LINC00339-203ENST00000420503 GATA6Q92908 595 aa13.75□□□□□ -0.21
LINC00339-203ENST00000420503 FUBP3Q96I24 572 aaKnown RBP eCLIP13.75□□□□□ -0.21
LINC00339-203ENST00000420503 SCNM1Q9BWG6 230 aa13.75□□□□□ -0.21
LINC00339-203ENST00000420503 GZF1Q9H116 711 aaPredicted RBP13.75□□□□□ -0.21
LINC00339-203ENST00000420503 TMEM9BQ9NQ34 198 aa13.75□□□□□ -0.21
LINC00339-203ENST00000420503 PANK4Q9NVE7 773 aa13.75□□□□□ -0.21
LINC00339-203ENST00000420503 MAGEC2Q9UBF1 373 aaPredicted RBP13.75□□□□□ -0.21
LINC00339-203ENST00000420503 CDH9Q9ULB4 789 aa13.75□□□□□ -0.21
LINC00339-203ENST00000420503 EXOC7Q9UPT5 735 aa13.75□□□□□ -0.21
LINC00339-203ENST00000420503 FASNP49327 2511 aaKnown RBP13.75□□□□□ -0.21
LINC00339-203ENST00000420503 CEP192Q8TEP8 1941 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 PLXND1Q9Y4D7 1925 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 HYAL3O43820 417 aaPredicted RBP13.74□□□□□ -0.21
LINC00339-203ENST00000420503 OLFM2O95897 454 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 BMP15O95972 392 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 OAS1P00973 400 aaKnown RBP13.74□□□□□ -0.21
LINC00339-203ENST00000420503 WARSP23381 471 aaKnown RBP13.74□□□□□ -0.21
LINC00339-203ENST00000420503 ABCD1P33897 745 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 P2RY2P41231 377 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 KIR2DL1P43626 348 aaPredicted RBP13.74□□□□□ -0.21
LINC00339-203ENST00000420503 FAM193AP78312 1265 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 SLC7A9P82251 487 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 TAF10Q12962 218 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 TRIM61Q5EBN2 209 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 DAB2IPQ5VWQ8 1189 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 SV2BQ7L1I2 683 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 BRAPQ7Z569 592 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 MIB1Q86YT6 1006 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 ADGRG2Q8IZP9 1017 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 PDILTQ8N807 584 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 NAT16Q8N8M0 369 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 FSIP1Q8NA03 581 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 ZFRQ96KR1 1074 aaKnown RBP13.74□□□□□ -0.21
LINC00339-203ENST00000420503 SPATA17Q96L03 361 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 MMS19Q96T76 1030 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 TTLL2Q9BWV7 592 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 ADAM33Q9BZ11 813 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 CD93Q9NPY3 652 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 OLFML3Q9NRN5 406 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 TRPM5Q9NZQ8 1165 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 SEL1LQ9UBV2 794 aa13.74□□□□□ -0.21
LINC00339-203ENST00000420503 SRPRBQ9Y5M8 271 aaKnown RBP13.74□□□□□ -0.21
LINC00339-203ENST00000420503 PCDH15Q96QU1 1955 aa13.73□□□□□ -0.21
LINC00339-203ENST00000420503 TCRBV21S2A2A0A5A6 115 aa13.73□□□□□ -0.21
LINC00339-203ENST00000420503 KAT7O95251 611 aa13.73□□□□□ -0.21
LINC00339-203ENST00000420503 ITPKAP23677 461 aa13.73□□□□□ -0.21
LINC00339-203ENST00000420503 WASP42768 502 aa13.73□□□□□ -0.21
LINC00339-203ENST00000420503 NR1H3Q13133 447 aa13.73□□□□□ -0.21
LINC00339-203ENST00000420503 COL9A2Q14055 689 aaPredicted RBP13.73□□□□□ -0.21
LINC00339-203ENST00000420503 MAP7D1Q3KQU3 841 aa13.73□□□□□ -0.21
LINC00339-203ENST00000420503 LY6G5CQ5SRR4 150 aa13.73□□□□□ -0.21
LINC00339-203ENST00000420503 C4orf50Q6ZRC1 276 aa13.73□□□□□ -0.21
LINC00339-203ENST00000420503 HS2ST1Q7LGA3 356 aa13.73□□□□□ -0.21
LINC00339-203ENST00000420503 RDH13Q8NBN7 331 aa13.73□□□□□ -0.21
LINC00339-203ENST00000420503 MYCBPAPQ8TBZ2 947 aa13.73□□□□□ -0.21
LINC00339-203ENST00000420503 ANKRD36BP1Q96IX9 119 aa13.73□□□□□ -0.21
LINC00339-203ENST00000420503 USP28Q96RU2 1077 aa13.73□□□□□ -0.21
LINC00339-203ENST00000420503 B3GNT5Q9BYG0 378 aa13.73□□□□□ -0.21
LINC00339-203ENST00000420503 CCDC39Q9UFE4 941 aa13.73□□□□□ -0.21
LINC00339-203ENST00000420503 KLK13Q9UKR3 277 aa13.73□□□□□ -0.21
LINC00339-203ENST00000420503 COCHO43405 550 aa13.72□□□□□ -0.21
LINC00339-203ENST00000420503 LDHAP00338 332 aaKnown RBP13.72□□□□□ -0.21
LINC00339-203ENST00000420503 DLATP10515 647 aaKnown RBP13.72□□□□□ -0.21
LINC00339-203ENST00000420503 MBL2P11226 248 aaPredicted RBP13.72□□□□□ -0.21
LINC00339-203ENST00000420503 ENGP17813 658 aa13.72□□□□□ -0.21
LINC00339-203ENST00000420503 CASP1P29466 404 aa13.72□□□□□ -0.21
LINC00339-203ENST00000420503 STAT6P42226 847 aa13.72□□□□□ -0.21
LINC00339-203ENST00000420503 VSTM1Q6UX27 236 aa13.72□□□□□ -0.21
LINC00339-203ENST00000420503 TRAPPC11Q7Z392 1133 aa13.72□□□□□ -0.21
LINC00339-203ENST00000420503 KDF1Q8NAX2 398 aaPredicted RBP13.72□□□□□ -0.21
LINC00339-203ENST00000420503 OR6B3Q8NGW1 331 aa13.72□□□□□ -0.21
LINC00339-203ENST00000420503 SCAMP5Q8TAC9 235 aa13.72□□□□□ -0.21
LINC00339-203ENST00000420503 SPATA18Q8TC71 538 aa13.72□□□□□ -0.21
LINC00339-203ENST00000420503 ZNF516Q92618 1163 aa13.72□□□□□ -0.21
LINC00339-203ENST00000420503 KCNK16Q96T55 309 aa13.72□□□□□ -0.21
LINC00339-203ENST00000420503 PNKPQ96T60 521 aa13.72□□□□□ -0.21
LINC00339-203ENST00000420503 SLC6A17Q9H1V8 727 aa13.72□□□□□ -0.21
LINC00339-203ENST00000420503 SMYD3Q9H7B4 428 aa13.72□□□□□ -0.21
LINC00339-203ENST00000420503 CCSER2Q9H7U1 834 aa13.72□□□□□ -0.21
LINC00339-203ENST00000420503 ARHGEF4Q9NR80 690 aa13.72□□□□□ -0.21
LINC00339-203ENST00000420503 HSPBP1Q9NZL4 362 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms