RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 ANO5Q75V66 913 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 TBC1D3Q8IZP1 549 aaPredicted RBP7.6□□□□□ -1.19
SCN9A-202ENST00000409435 EFHD2Q96C19 240 aaPredicted RBP7.6□□□□□ -1.19
SCN9A-202ENST00000409435 GDAP1L1Q96MZ0 367 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 NUDCD1Q96RS6 583 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 SFXN1Q9H9B4 322 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 SARS2Q9NP81 518 aaKnown RBP7.6□□□□□ -1.19
SCN9A-202ENST00000409435 TYW1Q9NV66 732 aaKnown RBP7.6□□□□□ -1.19
SCN9A-202ENST00000409435 WDR35Q9P2L0 1181 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 BZW2Q9Y6E2 419 aaKnown RBP7.6□□□□□ -1.19
SCN9A-202ENST00000409435 MSH4O15457 936 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 TREHO43280 583 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 C8AP07357 584 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 RPL9P32969 192 aaKnown RBP7.59□□□□□ -1.19
SCN9A-202ENST00000409435 SREBF1P36956 1147 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 GUCY1A3Q02108 690 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 KDSRQ06136 332 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 ITGB3BPQ13352 177 aaPredicted RBP7.59□□□□□ -1.19
SCN9A-202ENST00000409435 CNGA2Q16280 664 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 KYNUQ16719 465 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 ZNF618Q5T7W0 954 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 TATDN1Q6P1N9 297 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 PASD1Q8IV76 773 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 MB21D2Q8IYB1 491 aaPredicted RBP7.59□□□□□ -1.19
SCN9A-202ENST00000409435 TMEM86AQ8N2M4 240 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 ATPAF2Q8N5M1 289 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 RNF217Q8TC41 542 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 BBS2Q9BXC9 721 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 ZDHHC4Q9NPG8 344 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 HSPBP1Q9NZL4 362 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 MORF4L1Q9UBU8 362 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 HYOU1Q9Y4L1 999 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 FAM47E-STBD1D6RA91 191 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 H3BQ06 376 aaPredicted RBP7.59□□□□□ -1.19
SCN9A-202ENST00000409435 GOLGA8RI6L899 631 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 SUPT3HO75486 399 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 PYGMP11217 842 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 ARHGDIAP52565 204 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 DYNLT1P63172 113 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 GFPT1Q06210 699 aaPredicted RBP7.59□□□□□ -1.19
SCN9A-202ENST00000409435 KRR1Q13601 381 aaKnown RBP7.59□□□□□ -1.19
SCN9A-202ENST00000409435 KNOP1Q1ED39 458 aaKnown RBP7.59□□□□□ -1.19
SCN9A-202ENST00000409435 TMEM259Q4ZIN3 620 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 TMTC4Q5T4D3 741 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 TBC1D1Q86TI0 1168 aaPredicted RBP7.59□□□□□ -1.19
SCN9A-202ENST00000409435 CDH24Q86UP0 819 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 MAB21L3Q8N8X9 362 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 KRT12Q99456 494 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 NLNQ9BYT8 704 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 GPR63Q9BZJ6 419 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 ING2Q9H160 280 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 TRIM39Q9HCM9 518 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 SOHLH2Q9NX45 425 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 ADAM22Q9P0K1 906 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 PCDHA11Q9Y5I1 949 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 ADGRB1O14514 1584 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 MTA2O94776 668 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 SNUPNO95149 360 aaKnown RBP7.59□□□□□ -1.19
SCN9A-202ENST00000409435 MAGEA1P43355 309 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 PAPOLAP51003 745 aaKnown RBP7.59□□□□□ -1.19
SCN9A-202ENST00000409435 SP2Q02086 613 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 SH3D19Q5HYK7 790 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 LDLRAD1Q5T700 205 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 LRRC8BQ6P9F7 803 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 KRT73Q86Y46 540 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 MFN1Q8IWA4 741 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 C17orf53Q8N3J3 647 aaPredicted RBP7.59□□□□□ -1.19
SCN9A-202ENST00000409435 NPLOC4Q8TAT6 608 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 SIKE1Q9BRV8 207 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 EPB41L4AQ9HCS5 686 aaPredicted RBP7.59□□□□□ -1.19
SCN9A-202ENST00000409435 STX18Q9P2W9 335 aaKnown RBP7.59□□□□□ -1.19
SCN9A-202ENST00000409435 SLC13A4Q9UKG4 626 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 TOM1L1O75674 476 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 TMCC1O94876 653 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 CFHP08603 1231 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 PFKFB1P16118 471 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 RFX5P48382 616 aaPredicted RBP7.59□□□□□ -1.19
SCN9A-202ENST00000409435 ZNF445P59923 1031 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 C17orf99Q6UX52 265 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 RAPH1Q70E73 1250 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 FBXL13Q8NEE6 735 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 SNRNP27Q8WVK2 155 aaKnown RBP7.59□□□□□ -1.19
SCN9A-202ENST00000409435 CARD9Q9H257 536 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 DHX35Q9H5Z1 703 aaKnown RBP7.59□□□□□ -1.19
SCN9A-202ENST00000409435 SUN2Q9UH99 717 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 KLF15Q9UIH9 416 aa7.59□□□□□ -1.19
SCN9A-202ENST00000409435 CHD2O14647 1828 aaKnown RBP7.59□□□□□ -1.19
SCN9A-202ENST00000409435 ENC1O14682 589 aa7.59□□□□□ -1.2
SCN9A-202ENST00000409435 PPP6R2O75170 966 aa7.59□□□□□ -1.2
SCN9A-202ENST00000409435 ZBED1O96006 694 aa7.59□□□□□ -1.2
SCN9A-202ENST00000409435 ATP5C1P36542 298 aaKnown RBP7.59□□□□□ -1.2
SCN9A-202ENST00000409435 RHOAP61586 193 aa7.59□□□□□ -1.2
SCN9A-202ENST00000409435 SNRPFP62306 86 aaKnown RBP7.59□□□□□ -1.2
SCN9A-202ENST00000409435 COASYQ13057 564 aa7.59□□□□□ -1.2
SCN9A-202ENST00000409435 C4orf19Q8IY42 314 aa7.59□□□□□ -1.2
SCN9A-202ENST00000409435 ARHGEF26Q96DR7 871 aa7.59□□□□□ -1.2
SCN9A-202ENST00000409435 CNOT6LQ96LI5 555 aaKnown RBP7.59□□□□□ -1.2
SCN9A-202ENST00000409435 RUNDC3BQ96NL0 473 aa7.59□□□□□ -1.2
SCN9A-202ENST00000409435 NELL2Q99435 816 aa7.59□□□□□ -1.2
SCN9A-202ENST00000409435 UBXN6Q9BZV1 441 aa7.59□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms