RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 RPL10AP62906 217 aaKnown RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 HABP4Q5JVS0 413 aaKnown RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 SPDYAQ5MJ70 313 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 MYO1HQ8N1T3 1032 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 SNX31Q8N9S9 440 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 PHC3Q8NDX5 983 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 ZBTB9Q96C00 473 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 PARK7Q99497 189 aaKnown RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 C1orf50Q9BV19 199 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 SLC24A3Q9HC58 644 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 RPRD1BQ9NQG5 326 aaKnown RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 DBR1Q9UK59 544 aaKnown RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 ADAM28Q9UKQ2 775 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 DNPEPQ9ULA0 475 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 L1RE1Q9UN81 338 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 HPS5Q9UPZ3 1129 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 CORO2BQ9UQ03 480 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 ROBO2Q9HCK4 1378 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 FAM220BPB1ANY3 271 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 RNF103O00237 685 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 NFIBO00712 420 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 CYTH3O43739 400 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 ECE2O60344 883 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 GUCY1B2O75343 617 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 ECM2O94769 699 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 GYPCP04921 128 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 PGK2P07205 417 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 ALOX15P16050 662 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 OGNP20774 298 aaKnown RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 PRIM2P49643 509 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 NME3Q13232 169 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 ITGADQ13349 1161 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 CUL2Q13617 745 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 PHKG1Q16816 387 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 RFX4Q33E94 735 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 SPANXN3Q5MJ09 141 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 ARMC6Q6NXE6 501 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 ZNF438Q7Z4V0 828 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 NOP9Q86U38 636 aaKnown RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 CDK20Q8IZL9 346 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 C19orf18Q8NEA5 215 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 FAM151AQ8WW52 585 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 WNK4Q96J92 1243 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 CHAMP1Q96JM3 812 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 FAM210AQ96ND0 272 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 QRFPRQ96P65 431 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 REEP2Q9BRK0 252 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 DBNDD1Q9H9R9 158 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 LATS2Q9NRM7 1088 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 KLHL11Q9NVR0 708 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 TMEM216Q9P0N5 145 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 ZDHHC9Q9Y397 364 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 NCOA3Q9Y6Q9 1424 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 SMIM31A0A1B0GVY4 71 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 TRIM49D1C9J1S8 452 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 OGTO15294 1046 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 CST8O60676 142 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 PROSCO94903 275 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 CTCFP49711 727 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-203ENST00000409050 VCPP55072 806 aaKnown RBP6.3□□□□□ -1.4
SCN1A-203ENST00000409050 XRCC4Q13426 336 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 GNA13Q14344 377 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 TMEM132BQ14DG7 1078 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 PCBP1Q15365 356 aaKnown RBP eCLIP6.3□□□□□ -1.4
SCN1A-203ENST00000409050 VPS72Q15906 364 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 EZH2Q15910 746 aaKnown RBP6.3□□□□□ -1.4
SCN1A-203ENST00000409050 SAMD4BQ5PRF9 694 aaKnown RBP6.3□□□□□ -1.4
SCN1A-203ENST00000409050 ATF7IP2Q5U623 682 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 USP17L6PQ6QN14 398 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 CCDC103Q8IW40 242 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 KYQ8NBH2 561 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 ENGASEQ8NFI3 743 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 NSUN4Q96CB9 384 aaKnown RBP6.3□□□□□ -1.4
SCN1A-203ENST00000409050 EEF2KMTQ96G04 330 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 ZBED2Q9BTP6 218 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 RAVER2Q9HCJ3 691 aaKnown RBP6.3□□□□□ -1.4
SCN1A-203ENST00000409050 PRDM8Q9NQV8 689 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 KRT84Q9NSB2 600 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 TUBA8Q9NY65 449 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-203ENST00000409050 CRNNQ9UBG3 495 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-203ENST00000409050 FAM153AQ9UHL3 310 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 NAGPAQ9UK23 515 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 AIM2O14862 343 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 TDP2O95551 362 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 ECDO95905 644 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-203ENST00000409050 ITGA4P13612 1032 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 GUCA1AP43080 201 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-203ENST00000409050 SCTRP47872 440 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 BCAT1P54687 386 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 PTENP60484 403 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 SLC34A1Q06495 639 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 MMRN1Q13201 1228 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 PLD1Q13393 1074 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 LONRF1Q17RB8 773 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 USP39Q53GS9 565 aaKnown RBP6.3□□□□□ -1.4
SCN1A-203ENST00000409050 CDC73Q6P1J9 531 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 MZT2AQ6P582 158 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 GLB1LQ6UWU2 654 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 METTL3Q86U44 580 aaKnown RBP6.3□□□□□ -1.4
SCN1A-203ENST00000409050 RTL3Q8N8U3 475 aaKnown RBP6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 139.8 ms