RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 WDR44Q5JSH3 913 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 SLC8B1Q6J4K2 584 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 PDXDC1Q6P996 788 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 BMP8AQ7Z5Y6 402 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 CREBRFQ8IUR6 639 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 ARHGEF19Q8IW93 802 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 SLC44A3Q8N4M1 653 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 TTC39CQ8N584 583 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 TTC9BQ8N6N2 239 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 CCDC150Q8NCX0 1101 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 APPL2Q8NEU8 664 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 FAM174AQ8TBP5 190 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 WHAMMQ8TF30 809 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 MCRS1Q96EZ8 462 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 KREMEN1Q96MU8 473 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 NT5C1BQ96P26 610 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 TMEM209Q96SK2 561 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 PKMYT1Q99640 499 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 CRACR2AQ9BSW2 395 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 EDEM3Q9BZQ6 932 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 FOXQ1Q9C009 403 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 XPO4Q9C0E2 1151 aaKnown RBP9.79□□□□□ -0.84
VPS53-203ENST00000401468 GPR88Q9GZN0 384 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 SDCBP2Q9H190 292 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 SMYD3Q9H7B4 428 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 IFNKQ9P0W0 207 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 DNMT3BQ9UBC3 853 aaKnown RBP9.79□□□□□ -0.84
VPS53-203ENST00000401468 MTRRQ9UBK8 725 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 NME7Q9Y5B8 376 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 SNX9Q9Y5X1 595 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 CHD6Q8TD26 2715 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 KIAA1549LQ6ZVL6 1849 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 FAM186AA6NE01 2351 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 RIF1Q5UIP0 2472 aaKnown RBP9.78□□□□□ -0.84
VPS53-203ENST00000401468 SDK1Q7Z5N4 2213 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 PRRG1O14668 218 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 EPHB6O15197 1021 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 CBFA2T2O43439 604 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 CILPO75339 1184 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 PAPLNO95428 1278 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 LAMP2P13473 410 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 UCHL3P15374 230 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 LHX1P48742 406 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 KLK7P49862 253 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 ZNF132P52740 706 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 JAM2P57087 298 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 CREMQ03060 361 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 NNTQ13423 1086 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 HTR4Q13639 388 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 ARID5BQ14865 1188 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 AGERQ15109 404 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 WSCD1Q658N2 575 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 DSTYKQ6XUX3 929 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 ANKS3Q6ZW76 656 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 UNC93AQ86WB7 457 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 OSTM1Q86WC4 334 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 UBALD2Q8IYN6 164 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 ADGRF2Q8IZF7 708 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 CRYBG2Q8N1P7 616 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 STKLD1Q8NE28 680 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 CMASQ8NFW8 434 aaPredicted RBP9.78□□□□□ -0.84
VPS53-203ENST00000401468 SHC3Q92529 594 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 FGF13Q92913 245 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 ELMO3Q96BJ8 720 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 IQCDQ96DY2 449 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 MRFAP1L1Q96HT8 127 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 ARID3AQ99856 593 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 ACBD6Q9BR61 282 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 CORO1BQ9BR76 489 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 PLA2G2FQ9BZM2 168 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 CYP4F11Q9HBI6 524 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.78□□□□□ -0.84
VPS53-203ENST00000401468 NXF1Q9UBU9 619 aaKnown RBP9.78□□□□□ -0.84
VPS53-203ENST00000401468 AJAP1Q9UKB5 411 aaPredicted RBP9.78□□□□□ -0.84
VPS53-203ENST00000401468 MYO6Q9UM54 1294 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 DUSP12Q9UNI6 340 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 USTQ9Y2C2 406 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 R3HCC1Q9Y3T6 440 aaKnown RBP9.78□□□□□ -0.84
VPS53-203ENST00000401468 F5P12259 2224 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 SPAG17Q6Q759 2223 aa9.78□□□□□ -0.84
VPS53-203ENST00000401468 PTPRZ1P23471 2315 aaPredicted RBP9.77□□□□□ -0.85
VPS53-203ENST00000401468 A0A1W2PQJ5 194 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 H7C4K7 107 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 TERTO14746 1132 aaKnown RBP9.77□□□□□ -0.85
VPS53-203ENST00000401468 HUS1O60921 280 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 TPM3P06753 285 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 CCR2P41597 374 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 ZNF75DP51815 510 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 CDH8P55286 799 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 GPC5P78333 572 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 APBA1Q02410 837 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 YWHAHQ04917 246 aaPredicted RBP9.77□□□□□ -0.85
VPS53-203ENST00000401468 ADCY1Q08828 1119 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 GRM2Q14416 872 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 CTXN3Q4LDR2 81 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 PABPC1LQ4VXU2 614 aaKnown RBP9.77□□□□□ -0.85
VPS53-203ENST00000401468 OVOS1Q6IE37 1185 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 IQCEQ6IPM2 695 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 FAM171BQ6P995 826 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 TRIM46Q7Z4K8 759 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms