RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 TAP1Q03518 808 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 CDO1Q16878 200 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 RFWD3Q6PCD5 774 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 BANPQ8N9N5 519 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 UBA3Q8TBC4 463 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 INO80BQ9C086 356 aaPredicted RBP21.55■■□□□ 1.04
CLK3-202ENST00000395066 FBXO6Q9NRD1 293 aaPredicted RBP21.55■■□□□ 1.04
CLK3-202ENST00000395066 PPP1R1BQ9UD71 204 aaPredicted RBP21.55■■□□□ 1.04
CLK3-202ENST00000395066 EME2A4GXA9 379 aaPredicted RBP21.55■■□□□ 1.04
CLK3-202ENST00000395066 KBTBD13C9JR72 458 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 C2CD2LO14523 706 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 UPP2O95045 317 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 ARIH2O95376 493 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 PDHA1P08559 390 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 NFICP08651 508 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 KRT7P08729 469 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 YWHAEP62258 255 aaKnown RBP21.55■■□□□ 1.04
CLK3-202ENST00000395066 HADHQ16836 314 aaKnown RBP21.55■■□□□ 1.04
CLK3-202ENST00000395066 HSDL1Q3SXM5 330 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 KBTBD12Q3ZCT8 623 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 CLNKQ7Z7G1 428 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 PCGF5Q86SE9 256 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 CNKSR2Q8WXI2 1034 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 TTC17Q96AE7 1141 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 C12orf42Q96LP6 360 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 FAM111AQ96PZ2 611 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 CAMKK2Q96RR4 588 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 MIPEPQ99797 713 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 DHRS4Q9BTZ2 278 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 TLE6Q9H808 572 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 SOWAHBA6NEL2 793 aa21.54■■□□□ 1.04
CLK3-202ENST00000395066 MRPS35P82673 323 aaKnown RBP21.54■■□□□ 1.04
CLK3-202ENST00000395066 FAAP100Q0VG06 881 aa21.54■■□□□ 1.04
CLK3-202ENST00000395066 DPYSL3Q14195 570 aa21.54■■□□□ 1.04
CLK3-202ENST00000395066 TSNAXIP1Q2TAA8 658 aa21.54■■□□□ 1.04
CLK3-202ENST00000395066 C11orf91Q3C1V1 193 aa21.54■■□□□ 1.04
CLK3-202ENST00000395066 FYB2Q5VWT5 728 aa21.54■■□□□ 1.04
CLK3-202ENST00000395066 PDIK1LQ8N165 341 aa21.54■■□□□ 1.04
CLK3-202ENST00000395066 DCLRE1BQ9H816 532 aa21.54■■□□□ 1.04
CLK3-202ENST00000395066 MINDY3Q9H8M7 445 aa21.54■■□□□ 1.04
CLK3-202ENST00000395066 BTBD7Q9P203 1132 aa21.54■■□□□ 1.04
CLK3-202ENST00000395066 LNPEPQ9UIQ6 1025 aa21.54■■□□□ 1.04
CLK3-202ENST00000395066 SIX4Q9UIU6 781 aa21.54■■□□□ 1.04
CLK3-202ENST00000395066 ZNF112Q9UJU3 913 aa21.54■■□□□ 1.04
CLK3-202ENST00000395066 CFAP69A5D8W1 941 aa21.54■■□□□ 1.04
CLK3-202ENST00000395066 ACADSP16219 412 aa21.54■■□□□ 1.04
CLK3-202ENST00000395066 YWHAGP61981 247 aaKnown RBP eCLIP21.54■■□□□ 1.04
CLK3-202ENST00000395066 C15orf59Q2T9L4 293 aaPredicted RBP21.54■■□□□ 1.04
CLK3-202ENST00000395066 C1orf228Q6PIY5 440 aa21.54■■□□□ 1.04
CLK3-202ENST00000395066 PRPF39Q86UA1 669 aaKnown RBP21.54■■□□□ 1.04
CLK3-202ENST00000395066 DNAJC9Q8WXX5 260 aa21.54■■□□□ 1.04
CLK3-202ENST00000395066 MANSC1Q9H8J5 431 aa21.54■■□□□ 1.04
CLK3-202ENST00000395066 SAR1AQ9NR31 198 aa21.54■■□□□ 1.04
CLK3-202ENST00000395066 STRIP2Q9ULQ0 834 aa21.54■■□□□ 1.04
CLK3-202ENST00000395066 USP18Q9UMW8 372 aa21.54■■□□□ 1.04
CLK3-202ENST00000395066 TCRBV9S1A1TA0A576 114 aa21.53■■□□□ 1.04
CLK3-202ENST00000395066 LPXNO60711 386 aa21.53■■□□□ 1.04
CLK3-202ENST00000395066 LMNAP02545 664 aaKnown RBP21.53■■□□□ 1.04
CLK3-202ENST00000395066 TNNC2P02585 160 aa21.53■■□□□ 1.04
CLK3-202ENST00000395066 AP3M2P53677 418 aa21.53■■□□□ 1.04
CLK3-202ENST00000395066 PTK7Q13308 1070 aa21.53■■□□□ 1.04
CLK3-202ENST00000395066 CTC1Q2NKJ3 1217 aa21.53■■□□□ 1.04
CLK3-202ENST00000395066 ELOVL4Q9GZR5 314 aa21.53■■□□□ 1.04
CLK3-202ENST00000395066 HEY2Q9UBP5 337 aa21.53■■□□□ 1.04
CLK3-202ENST00000395066 ZBTB42B2RXF5 422 aa21.53■■□□□ 1.04
CLK3-202ENST00000395066 E7ESA3 106 aa21.53■■□□□ 1.04
CLK3-202ENST00000395066 PYGBP11216 843 aa21.53■■□□□ 1.04
CLK3-202ENST00000395066 BGNP21810 368 aa21.53■■□□□ 1.04
CLK3-202ENST00000395066 POLR2BP30876 1174 aaKnown RBP21.53■■□□□ 1.04
CLK3-202ENST00000395066 FAM102AQ5T9C2 384 aaPredicted RBP21.53■■□□□ 1.04
CLK3-202ENST00000395066 TRNP1Q6NT89 227 aa21.53■■□□□ 1.04
CLK3-202ENST00000395066 DARS2Q6PI48 645 aaKnown RBP21.53■■□□□ 1.04
CLK3-202ENST00000395066 CFAP36Q96G28 342 aa21.53■■□□□ 1.04
CLK3-202ENST00000395066 TRIM56Q9BRZ2 755 aaKnown RBP21.53■■□□□ 1.04
CLK3-202ENST00000395066 PPCSQ9HAB8 311 aa21.53■■□□□ 1.04
CLK3-202ENST00000395066 STAU2Q9NUL3 570 aaKnown RBP eCLIP21.53■■□□□ 1.04
CLK3-202ENST00000395066 ARL8BQ9NVJ2 186 aa21.53■■□□□ 1.04
CLK3-202ENST00000395066 GPATCH2LQ9NWQ4 482 aa21.53■■□□□ 1.04
CLK3-202ENST00000395066 HOXC10Q9NYD6 342 aa21.53■■□□□ 1.04
CLK3-202ENST00000395066 PIM2Q9P1W9 311 aa21.53■■□□□ 1.04
CLK3-202ENST00000395066 M0QYV0 167 aa21.52■■□□□ 1.04
CLK3-202ENST00000395066 MCF2LO15068 1137 aa21.52■■□□□ 1.04
CLK3-202ENST00000395066 HNRNPCL1O60812 293 aaKnown RBP21.52■■□□□ 1.04
CLK3-202ENST00000395066 MT-ND3P03897 115 aa21.52■■□□□ 1.04
CLK3-202ENST00000395066 IQCF3P0C7M6 154 aa21.52■■□□□ 1.04
CLK3-202ENST00000395066 CLCN3P51790 818 aa21.52■■□□□ 1.04
CLK3-202ENST00000395066 KLHL38Q2WGJ6 581 aa21.52■■□□□ 1.04
CLK3-202ENST00000395066 NCAPG2Q86XI2 1143 aa21.52■■□□□ 1.04
CLK3-202ENST00000395066 SLC4A11Q8NBS3 891 aa21.52■■□□□ 1.04
CLK3-202ENST00000395066 ZNF398Q8TD17 642 aa21.52■■□□□ 1.04
CLK3-202ENST00000395066 KCNN1Q92952 543 aa21.52■■□□□ 1.04
CLK3-202ENST00000395066 ANKRD36BP1Q96IX9 119 aa21.52■■□□□ 1.04
CLK3-202ENST00000395066 MICAL2O94851 1124 aa21.52■■□□□ 1.04
CLK3-202ENST00000395066 ITGB3P05106 788 aa21.52■■□□□ 1.04
CLK3-202ENST00000395066 NEFHP12036 1026 aa21.52■■□□□ 1.04
CLK3-202ENST00000395066 EFNA5P52803 228 aa21.52■■□□□ 1.04
CLK3-202ENST00000395066 CDH6P55285 790 aa21.52■■□□□ 1.04
CLK3-202ENST00000395066 RASA2Q15283 850 aa21.52■■□□□ 1.04
CLK3-202ENST00000395066 ATF7IP2Q5U623 682 aa21.52■■□□□ 1.04
CLK3-202ENST00000395066 TTC7BQ86TV6 843 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms