RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 ZNF528Q3MIS6 628 aa8.5□□□□□ -1.05
LIMS1-203ENST00000393310 GRASPQ7Z6J2 395 aaPredicted RBP8.5□□□□□ -1.05
LIMS1-203ENST00000393310 SLC44A2Q8IWA5 706 aaPredicted RBP8.5□□□□□ -1.05
LIMS1-203ENST00000393310 TPCN2Q8NHX9 752 aa8.5□□□□□ -1.05
LIMS1-203ENST00000393310 DCBLD2Q96PD2 775 aa8.5□□□□□ -1.05
LIMS1-203ENST00000393310 MRPL46Q9H2W6 279 aaKnown RBP8.5□□□□□ -1.05
LIMS1-203ENST00000393310 DUS2Q9NX74 493 aaKnown RBP8.5□□□□□ -1.05
LIMS1-203ENST00000393310 NCOR1O75376 2440 aa8.5□□□□□ -1.05
LIMS1-203ENST00000393310 NRXN2Q9P2S2 1712 aa8.5□□□□□ -1.05
LIMS1-203ENST00000393310 GSTTP1A0A1W2PQM5 241 aa8.5□□□□□ -1.05
LIMS1-203ENST00000393310 C5orf67F2Z3F1 127 aa8.5□□□□□ -1.05
LIMS1-203ENST00000393310 EYA4O95677 639 aa8.5□□□□□ -1.05
LIMS1-203ENST00000393310 CHKAP35790 457 aa8.5□□□□□ -1.05
LIMS1-203ENST00000393310 HARS2P49590 506 aaKnown RBP8.5□□□□□ -1.05
LIMS1-203ENST00000393310 COL9A3Q14050 684 aaPredicted RBP8.5□□□□□ -1.05
LIMS1-203ENST00000393310 RASGRP2Q7LDG7 609 aa8.5□□□□□ -1.05
LIMS1-203ENST00000393310 SIX6OS1Q8N1H7 587 aa8.5□□□□□ -1.05
LIMS1-203ENST00000393310 TRIML2Q8N7C3 387 aa8.5□□□□□ -1.05
LIMS1-203ENST00000393310 OR6B3Q8NGW1 331 aa8.5□□□□□ -1.05
LIMS1-203ENST00000393310 LTB4R2Q9NPC1 389 aa8.5□□□□□ -1.05
LIMS1-203ENST00000393310 ABI2Q9NYB9 513 aaPredicted RBP8.5□□□□□ -1.05
LIMS1-203ENST00000393310 SCHIP1Q9P0W5 487 aaPredicted RBP8.5□□□□□ -1.05
LIMS1-203ENST00000393310 GOLGA8IPA6NC78 632 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 SUPT3HO75486 399 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 PYGLP06737 847 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 CAPN1P07384 714 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 MCF2P10911 925 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 SNW1Q13573 536 aaKnown RBP8.49□□□□□ -1.05
LIMS1-203ENST00000393310 CCDC153Q494R4 210 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 FAM47EQ6ZV65 393 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 RYBPQ8N488 228 aaPredicted RBP8.49□□□□□ -1.05
LIMS1-203ENST00000393310 ST13P5Q8NFI4 369 aaPredicted RBP8.49□□□□□ -1.05
LIMS1-203ENST00000393310 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.49□□□□□ -1.05
LIMS1-203ENST00000393310 RHBDD1Q8TEB9 315 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 SMARCE1Q969G3 411 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 EDEM3Q9BZQ6 932 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 SLC2A4RGQ9NR83 387 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 PLIN4Q96Q06 1357 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 HNRNPCL2B2RXH8 293 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 HNRNPCL1O60812 293 aaKnown RBP8.49□□□□□ -1.05
LIMS1-203ENST00000393310 ECI2O75521 394 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 MYBP10242 640 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 RBP3P10745 1247 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 NUDT1P36639 197 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 SREBF1P36956 1147 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 BPIFB4P59827 614 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 ORC1Q13415 861 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 PLEKHG6Q3KR16 790 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 DNAJC18Q9H819 358 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 TBC1D13Q9NVG8 400 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 BARHL2Q9NY43 387 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 DNAI1Q9UI46 699 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 TMED5Q9Y3A6 229 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 UBR2Q8IWV8 1755 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 PRR23AA6NEV1 266 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 FGFR1P11362 822 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 NAMPTP43490 491 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 PER3P56645 1201 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 RRAGBQ5VZM2 374 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 SMRP1Q8NCR6 262 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 OTUB2Q96DC9 234 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 TUBA1CQ9BQE3 449 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 LXNQ9BS40 222 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 FBXO44Q9H4M3 255 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 ARHGEF4Q9NR80 690 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 MKS1Q9NXB0 559 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 UBIAD1Q9Y5Z9 338 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 BRCA2P51587 3418 aa8.49□□□□□ -1.05
LIMS1-203ENST00000393310 C1QTNF3-AMACRE9PGA6 284 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 MCM7P33993 719 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 EPHB4P54760 987 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 OSTNP61366 133 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 NKX3-2P78367 333 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 CCDC6Q16204 474 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 CREB3L3Q68CJ9 461 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 PADI6Q6TGC4 694 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 TMEM86AQ8N2M4 240 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 C12orf76Q8N812 135 aaPredicted RBP8.48□□□□□ -1.05
LIMS1-203ENST00000393310 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.48□□□□□ -1.05
LIMS1-203ENST00000393310 RFWD2Q8NHY2 731 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 WDR48Q8TAF3 677 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 PRCCQ92733 491 aaPredicted RBP8.48□□□□□ -1.05
LIMS1-203ENST00000393310 ZDBF2Q9HCK1 2354 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 A0A0B4J269 797 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 CASTOR2A6NHX0 329 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 SLC30A4O14863 429 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 EDNRBP24530 442 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 PPP1R2P41236 205 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 GPC3P51654 580 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 MC1RQ01726 317 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 LSM14AQ8ND56 463 aaKnown RBP8.48□□□□□ -1.05
LIMS1-203ENST00000393310 KAZALD1Q96I82 304 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 PLIN2Q99541 437 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 DUSP9Q99956 384 aaKnown RBP8.48□□□□□ -1.05
LIMS1-203ENST00000393310 OMDQ99983 421 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 HAUS8Q9BT25 410 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 ERVK-5Q9HDB9 667 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 BAIAP2L1Q9UHR4 511 aa8.48□□□□□ -1.05
LIMS1-203ENST00000393310 EIF3DO15371 548 aaKnown RBP eCLIP8.48□□□□□ -1.05
LIMS1-203ENST00000393310 AHCYL1O43865 530 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms