RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 PTPN1P18031 435 aaKnown RBP13.07□□□□□ -0.32
CIITA-202ENST00000381835 GPD2P43304 727 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 WDR5P61964 334 aaKnown RBP13.07□□□□□ -0.32
CIITA-202ENST00000381835 C1QBPQ07021 282 aaKnown RBP13.07□□□□□ -0.32
CIITA-202ENST00000381835 STILQ15468 1287 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 CYP4A22Q5TCH4 519 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 LIN9Q5TKA1 542 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 PPP1R2P3Q6NXS1 205 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 DAAM2Q86T65 1068 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 ZNF564Q8TBZ8 553 aaPredicted RBP13.07□□□□□ -0.32
CIITA-202ENST00000381835 SLC2A14Q8TDB8 520 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 BADQ92934 168 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 LRRC45Q96CN5 670 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 TRIM11Q96F44 468 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 CABS1Q96KC9 395 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 AP1M1Q9BXS5 423 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 SYNCQ9H7C4 482 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 PPANQ9NQ55 473 aaKnown RBP13.07□□□□□ -0.32
CIITA-202ENST00000381835 PFKMP08237 780 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 MYBL1P10243 752 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 CTNNA1P35221 906 aaKnown RBP13.07□□□□□ -0.32
CIITA-202ENST00000381835 SLC11A1P49279 550 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 PTP4A2Q12974 167 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 PTPN20Q4JDL3 420 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 MDH1BQ5I0G3 518 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 KIAA0319Q5VV43 1072 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 OVOS1Q6IE37 1185 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 TTC30AQ86WT1 665 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 DDX42Q86XP3 938 aaKnown RBP eCLIP13.07□□□□□ -0.32
CIITA-202ENST00000381835 LRRC43Q8N309 656 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 OR2W6PQ8NHA6 318 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 ACTRT1Q8TDG2 376 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 VCPIP1Q96JH7 1222 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 CPXM1Q96SM3 734 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 SYT15Q9BQS2 421 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 IL23AQ9NPF7 189 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 TJP2Q9UDY2 1190 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 DSEQ9UL01 958 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 ZBBXA8MT70 800 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 TMEM189-UBE2V1I3L0A0 370 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 BUB1BO60566 1050 aaPredicted RBP13.06□□□□□ -0.32
CIITA-202ENST00000381835 SYN1P17600 705 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 PAX3P23760 479 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 ECHS1P30084 290 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 IFT88Q13099 833 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 ARHGAP17Q68EM7 881 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 CCDC91Q7Z6B0 441 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 BTBD6Q96KE9 485 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 CRTAC1Q9NQ79 661 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 ADAM28Q9UKQ2 775 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 VWA8A3KMH1 1905 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 ARHGEF37A1IGU5 675 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 MYBPHLA2RUH7 354 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 SRRM3A6NNA2 597 aaPredicted RBP13.06□□□□□ -0.32
CIITA-202ENST00000381835 TMEM110-MUSTN1A8MSY1 372 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 PGRMC1O00264 195 aaKnown RBP13.06□□□□□ -0.32
CIITA-202ENST00000381835 PIK3R2O00459 728 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 CLDN5O00501 218 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 SART1O43290 800 aaKnown RBP13.06□□□□□ -0.32
CIITA-202ENST00000381835 TRAPPC3O43617 180 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 CYP11A1P05108 521 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 CALB1P05937 261 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 GALTP07902 379 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 PCSK1P29120 753 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 TKTP29401 623 aaKnown RBP13.06□□□□□ -0.32
CIITA-202ENST00000381835 RGS7P49802 495 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 YWHAHQ04917 246 aaPredicted RBP13.06□□□□□ -0.32
CIITA-202ENST00000381835 ODF2Q5BJF6 829 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 C16orf59Q7L2K0 433 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 CEP57Q86XR8 500 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 LRRC57Q8N9N7 239 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 UBLCP1Q8WVY7 318 aaPredicted RBP13.06□□□□□ -0.32
CIITA-202ENST00000381835 RTP3Q9BQQ7 232 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 MED10Q9BTT4 135 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 COLEC11Q9BWP8 271 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 AVENQ9NQS1 362 aaPredicted RBP13.06□□□□□ -0.32
CIITA-202ENST00000381835 UVRAGQ9P2Y5 699 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 PCDHB8Q9UN66 801 aa13.06□□□□□ -0.32
CIITA-202ENST00000381835 KRIT1O00522 736 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 EFCAB14O75071 495 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 GJB6O95452 261 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 PPARDQ03181 441 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 FPGSQ05932 587 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 MESDQ14696 234 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 UAP1Q16222 522 aaPredicted RBP13.05□□□□□ -0.32
CIITA-202ENST00000381835 PKDCCQ504Y2 493 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 SPOUT1Q5T280 376 aaKnown RBP13.05□□□□□ -0.32
CIITA-202ENST00000381835 ZNF365Q70YC5 407 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 FUKQ8N0W3 1084 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 ANKRD52Q8NB46 1076 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 C18orf8Q96DM3 657 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 CALR3Q96L12 384 aaKnown RBP13.05□□□□□ -0.32
CIITA-202ENST00000381835 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.05□□□□□ -0.32
CIITA-202ENST00000381835 TRIM7Q9C029 511 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 DDX47Q9H0S4 455 aaKnown RBP13.05□□□□□ -0.32
CIITA-202ENST00000381835 GEMIN8Q9NWZ8 242 aaKnown RBP13.05□□□□□ -0.32
CIITA-202ENST00000381835 MARCH5Q9NX47 278 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 ANAPC7Q9UJX3 599 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 GGA2Q9UJY4 613 aa13.05□□□□□ -0.32
CIITA-202ENST00000381835 CDH9Q9ULB4 789 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms