RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 PMPCBO75439 489 aa12.9□□□□□ -0.35
VPS13A-204ENST00000376634 KLRC3Q07444 240 aa12.9□□□□□ -0.35
VPS13A-204ENST00000376634 DDR2Q16832 855 aa12.9□□□□□ -0.35
VPS13A-204ENST00000376634 EFHC1Q5JVL4 640 aa12.9□□□□□ -0.35
VPS13A-204ENST00000376634 WDR36Q8NI36 951 aaKnown RBP12.9□□□□□ -0.35
VPS13A-204ENST00000376634 NFKBIZQ9BYH8 718 aa12.9□□□□□ -0.35
VPS13A-204ENST00000376634 TMEM8AQ9HCN3 771 aa12.9□□□□□ -0.35
VPS13A-204ENST00000376634 PDGFCQ9NRA1 345 aa12.9□□□□□ -0.35
VPS13A-204ENST00000376634 METP08581 1390 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 CLTBP09497 229 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 MAPKAPK2P49137 400 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 ZNF669Q96BR6 464 aaPredicted RBP12.89□□□□□ -0.35
VPS13A-204ENST00000376634 SERPINB12Q96P63 405 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 CDK5RAP1Q96SZ6 601 aaKnown RBP12.89□□□□□ -0.35
VPS13A-204ENST00000376634 GJB4Q9NTQ9 266 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 LNPEPQ9UIQ6 1025 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 MAGI2Q86UL8 1455 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 ATMINO43313 823 aaPredicted RBP12.89□□□□□ -0.35
VPS13A-204ENST00000376634 TDP2O95551 362 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 CTCFP49711 727 aaPredicted RBP12.89□□□□□ -0.35
VPS13A-204ENST00000376634 CYP4A22Q5TCH4 519 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 BHMTQ93088 406 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 CLPBQ9H078 707 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 ARIH1Q9Y4X5 557 aaPredicted RBP12.89□□□□□ -0.35
VPS13A-204ENST00000376634 ADRA2BP18089 450 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 KLHL17Q6TDP4 642 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 MIEF1Q9NQG6 463 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 AVENQ9NQS1 362 aaPredicted RBP12.89□□□□□ -0.35
VPS13A-204ENST00000376634 CCT8L1PA6NM43 557 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 MAGEA10P43363 369 aaPredicted RBP12.89□□□□□ -0.35
VPS13A-204ENST00000376634 SLC11A2P49281 568 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 SLC44A2Q8IWA5 706 aaPredicted RBP12.89□□□□□ -0.35
VPS13A-204ENST00000376634 SLC20A1Q8WUM9 679 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 CSNK2BP67870 215 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 DMPKQ09013 629 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 SUSD4Q5VX71 490 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 PLEKHA7Q6IQ23 1121 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 NCF1BA6NI72 391 aaPredicted RBP12.89□□□□□ -0.35
VPS13A-204ENST00000376634 NCF1CA8MVU1 366 aaPredicted RBP12.89□□□□□ -0.35
VPS13A-204ENST00000376634 GH1P01241 217 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 NCF1P14598 390 aaPredicted RBP12.89□□□□□ -0.35
VPS13A-204ENST00000376634 SNRPFP62306 86 aaKnown RBP12.89□□□□□ -0.35
VPS13A-204ENST00000376634 ARMC3Q5W041 872 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 MRNIPQ6NTE8 343 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 EMILIN2Q9BXX0 1053 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 CDK5RAP2Q96SN8 1893 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 CENPXA8MT69 81 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 PSMD12O00232 456 aaPredicted RBP12.89□□□□□ -0.35
VPS13A-204ENST00000376634 ZW10O43264 779 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 STAU1O95793 577 aaKnown RBP12.89□□□□□ -0.35
VPS13A-204ENST00000376634 STX4Q12846 297 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 PLA2G4FQ68DD2 849 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 LDHDQ86WU2 507 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 SH2D3CQ8N5H7 860 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 SNRNP27Q8WVK2 155 aaKnown RBP12.89□□□□□ -0.35
VPS13A-204ENST00000376634 E2F7Q96AV8 911 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 ADI1Q9BV57 179 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 KLHL4Q9C0H6 718 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 VTA1Q9NP79 307 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 RGS18Q9NS28 235 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 ENOPH1Q9UHY7 261 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 TBC1D12O60347 775 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 ZCCHC8Q6NZY4 707 aaKnown RBP12.89□□□□□ -0.35
VPS13A-204ENST00000376634 ZNF677Q86XU0 584 aa12.89□□□□□ -0.35
VPS13A-204ENST00000376634 RMND5BQ96G75 393 aaPredicted RBP12.89□□□□□ -0.35
VPS13A-204ENST00000376634 PRAMEF22A3QJZ6 481 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 RPS6KA5O75582 802 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 ATP6V1B2P21281 511 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 ITGA8P53708 1063 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 PRKCEQ02156 737 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 KDM6BO15054 1643 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 DLG5Q8TDM6 1919 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.88□□□□□ -0.35
VPS13A-204ENST00000376634 PRDX5P30044 214 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 DPYDQ12882 1025 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 ZNF177Q13360 481 aaPredicted RBP12.88□□□□□ -0.35
VPS13A-204ENST00000376634 PDIA6Q15084 440 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 ARMC4Q5T2S8 1044 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 KCTD14Q9BQ13 255 aaPredicted RBP12.88□□□□□ -0.35
VPS13A-204ENST00000376634 REEP2Q9BRK0 252 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 KCTD10Q9H3F6 313 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 PDS5AQ29RF7 1337 aaKnown RBP12.88□□□□□ -0.35
VPS13A-204ENST00000376634 TTC3P53804 2025 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 NR5A2O00482 541 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 PNPLA4P41247 253 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 DDX39BQ13838 428 aaKnown RBP12.88□□□□□ -0.35
VPS13A-204ENST00000376634 PDZK1Q5T2W1 519 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 ROPN1BQ9BZX4 212 aaPredicted RBP12.88□□□□□ -0.35
VPS13A-204ENST00000376634 ROPN1Q9HAT0 212 aaPredicted RBP12.88□□□□□ -0.35
VPS13A-204ENST00000376634 MUTP22033 750 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 KLHL12Q53G59 568 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 ADGRE3Q9BY15 652 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 CAAP1Q9H8G2 361 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 POLR1DQ9Y2S0 133 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 MKRN4PQ13434 485 aaPredicted RBP12.88□□□□□ -0.35
VPS13A-204ENST00000376634 RIN2Q8WYP3 895 aaPredicted RBP12.88□□□□□ -0.35
VPS13A-204ENST00000376634 RNFT2Q96EX2 444 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 NMT1P30419 496 aaKnown RBP12.88□□□□□ -0.35
VPS13A-204ENST00000376634 ADRM1Q16186 407 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 RSBN1Q5VWQ0 802 aaPredicted RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms