RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 SCN1AP35498 2009 aa15.03■□□□□ -0
HMGA1-203ENST00000374116 TMEM110-MUSTN1A8MSY1 372 aa15.03■□□□□ -0
HMGA1-203ENST00000374116 ALDH2P05091 517 aa15.03■□□□□ -0
HMGA1-203ENST00000374116 KRT19P08727 400 aa15.03■□□□□ -0
HMGA1-203ENST00000374116 TMEM191BP0C7N4 346 aa15.03■□□□□ -0
HMGA1-203ENST00000374116 CTNNA2P26232 953 aa15.03■□□□□ -0
HMGA1-203ENST00000374116 BMPR1AP36894 532 aa15.03■□□□□ -0
HMGA1-203ENST00000374116 PEX5P50542 639 aa15.03■□□□□ -0
HMGA1-203ENST00000374116 AP3M2P53677 418 aa15.03■□□□□ -0
HMGA1-203ENST00000374116 DHX34Q14147 1143 aaKnown RBP15.03■□□□□ -0
HMGA1-203ENST00000374116 LACTB2Q53H82 288 aaPredicted RBP15.03■□□□□ -0
HMGA1-203ENST00000374116 LRIG3Q6UXM1 1119 aa15.03■□□□□ -0
HMGA1-203ENST00000374116 NLRP14Q86W24 1093 aa15.03■□□□□ -0
HMGA1-203ENST00000374116 C1orf127Q8N9H9 656 aa15.03■□□□□ -0
HMGA1-203ENST00000374116 GDPD5Q8WTR4 605 aa15.03■□□□□ -0
HMGA1-203ENST00000374116 CD101Q93033 1021 aa15.03■□□□□ -0
HMGA1-203ENST00000374116 B3GALT6Q96L58 329 aa15.03■□□□□ -0
HMGA1-203ENST00000374116 ZNF558Q96NG5 402 aa15.03■□□□□ -0
HMGA1-203ENST00000374116 TGS1Q96RS0 853 aaKnown RBP15.03■□□□□ -0
HMGA1-203ENST00000374116 BATF3Q9NR55 127 aa15.03■□□□□ -0
HMGA1-203ENST00000374116 DPP3Q9NY33 737 aa15.03■□□□□ -0
HMGA1-203ENST00000374116 MYO7AQ13402 2215 aa15.02■□□□□ -0
HMGA1-203ENST00000374116 FAM170AA1A519 330 aa15.02■□□□□ -0
HMGA1-203ENST00000374116 ANKRD33BA6NCL7 494 aa15.02■□□□□ -0
HMGA1-203ENST00000374116 PODXLO00592 558 aa15.02■□□□□ -0
HMGA1-203ENST00000374116 B3GAT3O94766 335 aa15.02■□□□□ -0
HMGA1-203ENST00000374116 ITGB3P05106 788 aa15.02■□□□□ -0
HMGA1-203ENST00000374116 DR1Q01658 176 aa15.02■□□□□ -0
HMGA1-203ENST00000374116 ZNF211Q13398 564 aaPredicted RBP15.02■□□□□ -0
HMGA1-203ENST00000374116 MTMR3Q13615 1198 aa15.02■□□□□ -0
HMGA1-203ENST00000374116 UPP1Q16831 310 aa15.02■□□□□ -0
HMGA1-203ENST00000374116 SEL1L2Q5TEA6 688 aa15.02■□□□□ -0
HMGA1-203ENST00000374116 CYB5D1Q6P9G0 228 aa15.02■□□□□ -0
HMGA1-203ENST00000374116 DDX42Q86XP3 938 aaKnown RBP eCLIP15.02■□□□□ -0
HMGA1-203ENST00000374116 WDR49Q8IV35 697 aa15.02■□□□□ -0
HMGA1-203ENST00000374116 FUKQ8N0W3 1084 aa15.02■□□□□ -0
HMGA1-203ENST00000374116 MARCH5Q9NX47 278 aa15.02■□□□□ -0
HMGA1-203ENST00000374116 UBQLN1Q9UMX0 589 aaKnown RBP15.02■□□□□ -0
HMGA1-203ENST00000374116 TRANK1O15050 2925 aa15.02□□□□□ -0.01
HMGA1-203ENST00000374116 DAPK3O43293 454 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 ATMINO43313 823 aaPredicted RBP15.01□□□□□ -0.01
HMGA1-203ENST00000374116 FGF18O76093 207 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 CST3P01034 146 aaPredicted RBP15.01□□□□□ -0.01
HMGA1-203ENST00000374116 MYBL1P10243 752 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 UNGP13051 313 aaPredicted RBP15.01□□□□□ -0.01
HMGA1-203ENST00000374116 LAG3P18627 525 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 DNAJB1P25685 340 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 POLR2BP30876 1174 aaKnown RBP15.01□□□□□ -0.01
HMGA1-203ENST00000374116 CTNNA1P35221 906 aaKnown RBP15.01□□□□□ -0.01
HMGA1-203ENST00000374116 PIK3CAP42336 1068 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 BRCC3P46736 316 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 CUL2Q13617 745 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 GRIN2CQ14957 1233 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 SMYD5Q6GMV2 418 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 CD300LGQ6UXG3 332 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 TAS1R1Q7RTX1 841 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 UBR7Q8N806 425 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 BEST2Q8NFU1 509 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 KRT35Q92764 455 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 TRIM11Q96F44 468 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 CCT8L2Q96SF2 557 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 PRDM12Q9H4Q4 367 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 SLC38A7Q9NVC3 462 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 SIX4Q9UIU6 781 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 C2CD2Q9Y426 696 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 NR2E1Q9Y466 385 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 PCDHB12Q9Y5F1 795 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 PCDHA3Q9Y5H8 950 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 HMGB1P1B2RPK0 211 aaPredicted RBP15.01□□□□□ -0.01
HMGA1-203ENST00000374116 SPOPO43791 374 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 PHF2O75151 1096 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 KRT14P02533 472 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 CHRNA3P32297 505 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 HSD17B3P37058 310 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 MDH1P40925 334 aaKnown RBP15.01□□□□□ -0.01
HMGA1-203ENST00000374116 ERVK-21P61565 698 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 XRCC4Q13426 336 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 BIRC3Q13489 604 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 DUOXA2Q1HG44 320 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 C9orf57Q5W0N0 161 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 SPOPLQ6IQ16 392 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 SLC39A11Q8N1S5 342 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 FBXO22Q8NEZ5 403 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 IGSF21Q96ID5 467 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 ANKRD36BP1Q96IX9 119 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 VN1R3Q9BXE9 311 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 GPR62Q9BZJ7 368 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 AVENQ9NQS1 362 aaPredicted RBP15.01□□□□□ -0.01
HMGA1-203ENST00000374116 CNOT8Q9UFF9 292 aaKnown RBP15.01□□□□□ -0.01
HMGA1-203ENST00000374116 RASAL2Q9UJF2 1139 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 AGAP1Q9UPQ3 857 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 PLAAQ9Y263 795 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 NUB1Q9Y5A7 615 aa15.01□□□□□ -0.01
HMGA1-203ENST00000374116 C5orf60A6NFR6 353 aa15□□□□□ -0.01
HMGA1-203ENST00000374116 SPTLC1O15269 473 aa15□□□□□ -0.01
HMGA1-203ENST00000374116 GRM6O15303 877 aa15□□□□□ -0.01
HMGA1-203ENST00000374116 ASS1P00966 412 aaKnown RBP15□□□□□ -0.01
HMGA1-203ENST00000374116 NR1D1P20393 614 aa15□□□□□ -0.01
HMGA1-203ENST00000374116 PAX7P23759 505 aa15□□□□□ -0.01
HMGA1-203ENST00000374116 DRG2P55039 364 aaKnown RBP15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms