RNA–Protein interactions for RNA: ENST00000368979.6

SNX3-203, Transcript of sorting nexin 3, humanhuman

TSL 2

Gene SNX3, Length 1,537 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-203ENST00000368979 PSTPIP1O43586 416 aa25.09■■□□□ 1.61
SNX3-203ENST00000368979 CEP104O60308 925 aa25.09■■□□□ 1.61
SNX3-203ENST00000368979 GPD1P21695 349 aa25.09■■□□□ 1.61
SNX3-203ENST00000368979 FLT3P36888 993 aa25.09■■□□□ 1.61
SNX3-203ENST00000368979 PAFAH1B1P43034 410 aa25.09■■□□□ 1.61
SNX3-203ENST00000368979 TAS2R40P59535 323 aa25.09■■□□□ 1.61
SNX3-203ENST00000368979 TAF5Q15542 800 aa25.09■■□□□ 1.61
SNX3-203ENST00000368979 SLC39A12Q504Y0 691 aa25.09■■□□□ 1.61
SNX3-203ENST00000368979 SPOUT1Q5T280 376 aaKnown RBP25.09■■□□□ 1.61
SNX3-203ENST00000368979 ARCQ7LC44 396 aa25.09■■□□□ 1.61
SNX3-203ENST00000368979 ACTRT1Q8TDG2 376 aa25.09■■□□□ 1.61
SNX3-203ENST00000368979 RPGRIP1Q96KN7 1286 aa25.09■■□□□ 1.61
SNX3-203ENST00000368979 YME1L1Q96TA2 773 aa25.09■■□□□ 1.61
SNX3-203ENST00000368979 BUD13Q9BRD0 619 aaKnown RBP eCLIP25.09■■□□□ 1.61
SNX3-203ENST00000368979 LRRC4Q9HBW1 653 aa25.09■■□□□ 1.61
SNX3-203ENST00000368979 PNPLA8Q9NP80 782 aa25.09■■□□□ 1.61
SNX3-203ENST00000368979 SMARCAL1Q9NZC9 954 aa25.09■■□□□ 1.61
SNX3-203ENST00000368979 USTQ9Y2C2 406 aa25.09■■□□□ 1.61
SNX3-203ENST00000368979 KIAA1671Q9BY89 1806 aa25.09■■□□□ 1.61
SNX3-203ENST00000368979 CARNS1A5YM72 827 aa25.08■■□□□ 1.61
SNX3-203ENST00000368979 H7C4K7 107 aa25.08■■□□□ 1.61
SNX3-203ENST00000368979 DPYSL4O14531 572 aa25.08■■□□□ 1.61
SNX3-203ENST00000368979 ZNF143P52747 638 aaPredicted RBP25.08■■□□□ 1.61
SNX3-203ENST00000368979 HTRA4P83105 476 aaPredicted RBP25.08■■□□□ 1.61
SNX3-203ENST00000368979 ACAP1Q15027 740 aa25.08■■□□□ 1.61
SNX3-203ENST00000368979 NFE2Q16621 373 aaPredicted RBP25.08■■□□□ 1.61
SNX3-203ENST00000368979 CC2D1AQ6P1N0 951 aaPredicted RBP25.08■■□□□ 1.61
SNX3-203ENST00000368979 ANKS3Q6ZW76 656 aa25.08■■□□□ 1.61
SNX3-203ENST00000368979 RHOT1Q8IXI2 618 aa25.08■■□□□ 1.61
SNX3-203ENST00000368979 COLGALT1Q8NBJ5 622 aa25.08■■□□□ 1.61
SNX3-203ENST00000368979 FUBP3Q96I24 572 aaKnown RBP eCLIP25.08■■□□□ 1.61
SNX3-203ENST00000368979 OXCT2Q9BYC2 517 aaPredicted RBP25.08■■□□□ 1.61
SNX3-203ENST00000368979 TTC7AQ9ULT0 858 aaPredicted RBP25.08■■□□□ 1.61
SNX3-203ENST00000368979 GRAP2O75791 330 aa25.07■■□□□ 1.6
SNX3-203ENST00000368979 GJB5O95377 273 aa25.07■■□□□ 1.6
SNX3-203ENST00000368979 TKTL1P51854 596 aa25.07■■□□□ 1.6
SNX3-203ENST00000368979 RABGGTBP53611 331 aa25.07■■□□□ 1.6
SNX3-203ENST00000368979 RWDD2BP57060 319 aa25.07■■□□□ 1.6
SNX3-203ENST00000368979 RNASE9P60153 205 aaKnown RBP25.07■■□□□ 1.6
SNX3-203ENST00000368979 MRPS5P82675 430 aaKnown RBP25.07■■□□□ 1.6
SNX3-203ENST00000368979 ITIH3Q06033 890 aa25.07■■□□□ 1.6
SNX3-203ENST00000368979 RSRC2Q7L4I2 434 aaKnown RBP25.07■■□□□ 1.6
SNX3-203ENST00000368979 GPRIN1Q7Z2K8 1008 aa25.07■■□□□ 1.6
SNX3-203ENST00000368979 SIX6OS1Q8N1H7 587 aa25.07■■□□□ 1.6
SNX3-203ENST00000368979 RXFP2Q8WXD0 754 aa25.07■■□□□ 1.6
SNX3-203ENST00000368979 HTATIP2Q9BUP3 242 aa25.07■■□□□ 1.6
SNX3-203ENST00000368979 CXXC1Q9P0U4 656 aaPredicted RBP25.07■■□□□ 1.6
SNX3-203ENST00000368979 FBXO21O94952 628 aa25.07■■□□□ 1.6
SNX3-203ENST00000368979 SYN1P17600 705 aa25.07■■□□□ 1.6
SNX3-203ENST00000368979 USP41Q3LFD5 358 aa25.07■■□□□ 1.6
SNX3-203ENST00000368979 EFHC1Q5JVL4 640 aa25.07■■□□□ 1.6
SNX3-203ENST00000368979 ARFGAP1Q8N6T3 406 aa25.07■■□□□ 1.6
SNX3-203ENST00000368979 RNPC3Q96LT9 517 aaKnown RBP25.07■■□□□ 1.6
SNX3-203ENST00000368979 CNPY3Q9BT09 278 aa25.07■■□□□ 1.6
SNX3-203ENST00000368979 CHST7Q9NS84 486 aa25.07■■□□□ 1.6
SNX3-203ENST00000368979 SBDSQ9Y3A5 250 aaKnown RBP eCLIP25.07■■□□□ 1.6
SNX3-203ENST00000368979 MKI67P46013 3256 aaKnown RBP25.06■■□□□ 1.6
SNX3-203ENST00000368979 LRCH4O75427 683 aa25.06■■□□□ 1.6
SNX3-203ENST00000368979 TCF4P15884 667 aa25.06■■□□□ 1.6
SNX3-203ENST00000368979 PDGFRAP16234 1089 aa25.06■■□□□ 1.6
SNX3-203ENST00000368979 NDUFV1P49821 464 aa25.06■■□□□ 1.6
SNX3-203ENST00000368979 ZNF211Q13398 564 aaPredicted RBP25.06■■□□□ 1.6
SNX3-203ENST00000368979 LRRC38Q5VT99 294 aa25.06■■□□□ 1.6
SNX3-203ENST00000368979 RSPO2Q6UXX9 243 aaPredicted RBP25.06■■□□□ 1.6
SNX3-203ENST00000368979 HERVK_113Q902F9 699 aa25.06■■□□□ 1.6
SNX3-203ENST00000368979 GOLGA1Q92805 767 aa25.06■■□□□ 1.6
SNX3-203ENST00000368979 CNGB3Q9NQW8 809 aa25.06■■□□□ 1.6
SNX3-203ENST00000368979 ASNSD1Q9NWL6 643 aa25.06■■□□□ 1.6
SNX3-203ENST00000368979 PGRMC1O00264 195 aaKnown RBP25.05■■□□□ 1.6
SNX3-203ENST00000368979 SOD2P04179 222 aa25.05■■□□□ 1.6
SNX3-203ENST00000368979 PYGMP11217 842 aa25.05■■□□□ 1.6
SNX3-203ENST00000368979 CYP2F1P24903 491 aa25.05■■□□□ 1.6
SNX3-203ENST00000368979 CCDC14Q49A88 953 aa25.05■■□□□ 1.6
SNX3-203ENST00000368979 PRSS55Q6UWB4 352 aaPredicted RBP25.05■■□□□ 1.6
SNX3-203ENST00000368979 SPATA4Q8NEY3 305 aa25.05■■□□□ 1.6
SNX3-203ENST00000368979 PIK3R5Q8WYR1 880 aa25.05■■□□□ 1.6
SNX3-203ENST00000368979 HERC2P3Q9BVR0 1158 aa25.05■■□□□ 1.6
SNX3-203ENST00000368979 ULBP1Q9BZM6 244 aa25.05■■□□□ 1.6
SNX3-203ENST00000368979 ABI2Q9NYB9 513 aaPredicted RBP25.05■■□□□ 1.6
SNX3-203ENST00000368979 MTRRQ9UBK8 725 aa25.05■■□□□ 1.6
SNX3-203ENST00000368979 PCDHB5Q9Y5E4 795 aa25.05■■□□□ 1.6
SNX3-203ENST00000368979 COL4A4P53420 1690 aaPredicted RBP25.04■■□□□ 1.6
SNX3-203ENST00000368979 HSF2BPO75031 334 aa25.04■■□□□ 1.6
SNX3-203ENST00000368979 DAOAP59103 153 aa25.04■■□□□ 1.6
SNX3-203ENST00000368979 SLC25A11Q02978 314 aaKnown RBP25.04■■□□□ 1.6
SNX3-203ENST00000368979 GPR17Q13304 367 aa25.04■■□□□ 1.6
SNX3-203ENST00000368979 KATNAL2Q8IYT4 538 aa25.04■■□□□ 1.6
SNX3-203ENST00000368979 SCML4Q8N228 414 aa25.04■■□□□ 1.6
SNX3-203ENST00000368979 TMEM169Q96HH4 297 aa25.04■■□□□ 1.6
SNX3-203ENST00000368979 CFAP57Q96MR6 1250 aa25.04■■□□□ 1.6
SNX3-203ENST00000368979 SPG21Q9NZD8 308 aa25.04■■□□□ 1.6
SNX3-203ENST00000368979 NOL12Q9UGY1 213 aaKnown RBP eCLIP25.04■■□□□ 1.6
SNX3-203ENST00000368979 BACE2Q9Y5Z0 518 aa25.04■■□□□ 1.6
SNX3-203ENST00000368979 V9GYY5 206 aaPredicted RBP25.04■■□□□ 1.6
SNX3-203ENST00000368979 DAB1O75553 588 aa25.03■■□□□ 1.6
SNX3-203ENST00000368979 GLI1P08151 1106 aa25.03■■□□□ 1.6
SNX3-203ENST00000368979 LINC00271P0C7V0 271 aa25.03■■□□□ 1.6
SNX3-203ENST00000368979 CPB1P15086 417 aa25.03■■□□□ 1.6
SNX3-203ENST00000368979 SDC4P31431 198 aa25.03■■□□□ 1.6
SNX3-203ENST00000368979 SSR1P43307 286 aaKnown RBP25.03■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms