RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 PLSCR1O15162 318 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 TCF7P36402 384 aaPredicted RBP12.67□□□□□ -0.38
CLIP3-201ENST00000360535 ARL2P36404 184 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 RTP1P59025 263 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 SLC25A11Q02978 314 aaKnown RBP12.67□□□□□ -0.38
CLIP3-201ENST00000360535 TNFAIP1Q13829 316 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 KRT81Q14533 505 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 FKBP1CQ5VVH2 108 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 EEF1DP3Q658K8 133 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 CDHR3Q6ZTQ4 885 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 LMNTD2Q8IXW0 634 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 BANPQ8N9N5 519 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 DNAJC9Q8WXX5 260 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 INPP5DQ92835 1189 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 STMN2Q93045 179 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 FAM161BQ96MY7 647 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 BATF3Q9NR55 127 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 NRBP2Q9NSY0 501 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 USP18Q9UMW8 372 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.67□□□□□ -0.38
CLIP3-201ENST00000360535 COL4A5P29400 1685 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 H3BRJ5 948 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 ROR1Q01973 937 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 TSNAXIP1Q2TAA8 658 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 ZNF667Q5HYK9 610 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 MROH9Q5TGP6 573 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 NCAPG2Q86XI2 1143 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 ARID3BQ8IVW6 561 aaPredicted RBP12.67□□□□□ -0.38
CLIP3-201ENST00000360535 MICALL2Q8IY33 904 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 AGBL3Q8NEM8 1001 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 WDR60Q8WVS4 1066 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 NSL1Q96IY1 281 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 CLPTM1LQ96KA5 538 aa12.67□□□□□ -0.38
CLIP3-201ENST00000360535 COL2A1P02458 1487 aaPredicted RBP12.66□□□□□ -0.38
CLIP3-201ENST00000360535 IQANK1A0A1B0GTG1 560 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 DPPA5A6NC42 116 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 C3orf70A6NLC5 250 aaPredicted RBP12.66□□□□□ -0.38
CLIP3-201ENST00000360535 CXorf49A8MYA2 514 aaPredicted RBP12.66□□□□□ -0.38
CLIP3-201ENST00000360535 TOM1L1O75674 476 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 BAG2O95816 211 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 GNAZP19086 355 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 UBA1P22314 1058 aaKnown RBP12.66□□□□□ -0.38
CLIP3-201ENST00000360535 TUBP50607 506 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 THOC5Q13769 683 aaKnown RBP12.66□□□□□ -0.38
CLIP3-201ENST00000360535 DRICH1Q6PGQ1 229 aaPredicted RBP12.66□□□□□ -0.38
CLIP3-201ENST00000360535 WDR49Q8IV35 697 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 SLC25A41Q8N5S1 370 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 ANKRD36BP1Q96IX9 119 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 PIWIL1Q96J94 861 aaKnown RBP12.66□□□□□ -0.38
CLIP3-201ENST00000360535 NMUR2Q9GZQ4 415 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 STYXL1Q9Y6J8 313 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 CCDC22O60826 627 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 SMNDC1O75940 238 aaKnown RBP eCLIP12.66□□□□□ -0.38
CLIP3-201ENST00000360535 ITGB3P05106 788 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 ZNF132P52740 706 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 ALDH18A1P54886 795 aaKnown RBP12.66□□□□□ -0.38
CLIP3-201ENST00000360535 YWHAEP62258 255 aaKnown RBP12.66□□□□□ -0.38
CLIP3-201ENST00000360535 LAMTOR4Q0VGL1 99 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 LRRC38Q5VT99 294 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 ANO7Q6IWH7 933 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 TMEM154Q6P9G4 183 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 CCDC110Q8TBZ0 833 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 UCMAQ8WVF2 138 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 SHCBP1LQ9BZQ2 653 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 PCMTD2Q9NV79 361 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 DLGAP2Q9P1A6 1054 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 B2RBV5 119 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 FCHO1O14526 889 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 OGTO15294 1046 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 PTPRAP18433 802 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 CLCN3P51790 818 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 ACSBG2Q5FVE4 666 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 C4orf50Q6ZRC1 276 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 BBS12Q6ZW61 710 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 ZBTB8OSQ8IWT0 167 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 FBXO27Q8NI29 283 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 PPP1R14CQ8TAE6 165 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 BTBD10Q9BSF8 475 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 ZFATQ9P243 1243 aa12.66□□□□□ -0.38
CLIP3-201ENST00000360535 TCRBV5S1A1TA0A578 114 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 SPDYE5A6NIY4 337 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 SIGLEC16A6NMB1 481 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 NOP56O00567 594 aaKnown RBP12.65□□□□□ -0.38
CLIP3-201ENST00000360535 NVLO15381 856 aaKnown RBP12.65□□□□□ -0.38
CLIP3-201ENST00000360535 GSC2O15499 205 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 PDGFRAP16234 1089 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 EIF4BP23588 611 aaKnown RBP12.65□□□□□ -0.38
CLIP3-201ENST00000360535 ASPAP45381 313 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 SERPINB4P48594 390 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 ZC3H12AQ5D1E8 599 aaKnown RBP12.65□□□□□ -0.38
CLIP3-201ENST00000360535 SNX30Q5VWJ9 437 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 CASC4Q6P4E1 433 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 TTC13Q8NBP0 860 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 PEBP4Q96S96 227 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 SRPK1Q96SB4 655 aaKnown RBP12.65□□□□□ -0.38
CLIP3-201ENST00000360535 PCYT2Q99447 389 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 NMRK1Q9NWW6 199 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 ZC3H7BQ9UGR2 993 aaKnown RBP12.65□□□□□ -0.38
CLIP3-201ENST00000360535 STRIP2Q9ULQ0 834 aa12.65□□□□□ -0.38
CLIP3-201ENST00000360535 GINS2Q9Y248 185 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms