RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 ANO5Q75V66 913 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 VPS37AQ8NEZ2 397 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 CELF6Q96J87 481 aaKnown RBP16.13■□□□□ 0.17
PTPRF-201ENST00000359947 RUVBL2Q9Y230 463 aaKnown RBP16.13■□□□□ 0.17
PTPRF-201ENST00000359947 TMEM150BA6NC51 233 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 VPS26AO75436 327 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 TRPC1P48995 793 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 KCNK10P57789 538 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 CNTN2Q02246 1040 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 FAM167BQ9BTA0 163 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 UBXN6Q9BZV1 441 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 CYP4F12Q9HCS2 524 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 NSMCE4AQ9NXX6 385 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 FOXN3O00409 490 aaPredicted RBP16.13■□□□□ 0.17
PTPRF-201ENST00000359947 TNNI3P19429 210 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 GRK3P35626 688 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 SERPINB9P50453 376 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 CCL23P55773 120 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 PGM5Q15124 567 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 KYNUQ16719 465 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 RARS2Q5T160 578 aaKnown RBP16.13■□□□□ 0.17
PTPRF-201ENST00000359947 METTL7BQ6UX53 244 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 PLEKHM3Q6ZWE6 761 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 OLFML3Q9NRN5 406 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.13■□□□□ 0.17
PTPRF-201ENST00000359947 DYRK3O43781 588 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 KPNA6O60684 536 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 SKAP2O75563 359 aaPredicted RBP16.13■□□□□ 0.17
PTPRF-201ENST00000359947 ADAM32Q8TC27 787 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 CLPBQ9H078 707 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 C17orf75Q9HAS0 396 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 NOP53Q9NZM5 478 aaKnown RBP16.13■□□□□ 0.17
PTPRF-201ENST00000359947 CHN1P15882 459 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 SNRPFP62306 86 aaKnown RBP16.13■□□□□ 0.17
PTPRF-201ENST00000359947 ZNF677Q86XU0 584 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 SH2D3CQ8N5H7 860 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 SYTL5Q8TDW5 730 aaPredicted RBP16.13■□□□□ 0.17
PTPRF-201ENST00000359947 PRPF18Q99633 342 aaKnown RBP16.13■□□□□ 0.17
PTPRF-201ENST00000359947 CEP41Q9BYV8 373 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 USE1Q9NZ43 259 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 DPP7Q9UHL4 492 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 POLR1AO95602 1720 aaPredicted RBP16.13■□□□□ 0.17
PTPRF-201ENST00000359947 SUPT7LO94864 414 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 GEMP55040 296 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 ACVR2BQ13705 512 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 E2F4Q16254 413 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 CENPPQ6IPU0 288 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 EMC1Q8N766 993 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 ZC4H2Q9NQZ6 224 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 IARS2Q9NSE4 1012 aaKnown RBP16.12■□□□□ 0.17
PTPRF-201ENST00000359947 LNPEPQ9UIQ6 1025 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 MRFAP1Q9Y605 127 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 A0A1B0GTH6 734 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 EVPLLA8MZ36 301 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 ADCY3O60266 1144 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 CAND2O75155 1236 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 DSG3P32926 999 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 CHI3L2Q15782 390 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 FAM83EQ2M2I3 478 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 DEPDC1Q5TB30 811 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 VN1R5Q7Z5H4 357 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 DDX42Q86XP3 938 aaKnown RBP eCLIP16.12■□□□□ 0.17
PTPRF-201ENST00000359947 ADAM21Q9UKJ8 722 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 PPP2R3BQ9Y5P8 575 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 MTSS1O43312 755 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 VDRP11473 427 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 TBL3Q12788 808 aaKnown RBP16.12■□□□□ 0.17
PTPRF-201ENST00000359947 ACOX1Q15067 660 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 FBXO47Q5MNV8 452 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 GPC2Q8N158 579 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 FICDQ9BVA6 458 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 RBM12Q9NTZ6 932 aaKnown RBP16.12■□□□□ 0.17
PTPRF-201ENST00000359947 CHUKO15111 745 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 STAU1O95793 577 aaKnown RBP16.12■□□□□ 0.17
PTPRF-201ENST00000359947 MUTP22033 750 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 EIF2B5Q13144 721 aaKnown RBP16.12■□□□□ 0.17
PTPRF-201ENST00000359947 MSRAQ9UJ68 235 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 POM121L1PQ3SYA9 428 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 MRNIPQ6NTE8 343 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 RASGRP2Q7LDG7 609 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 STAMBPL1Q96FJ0 436 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 ZCCHC17Q9NP64 241 aaKnown RBP16.12■□□□□ 0.17
PTPRF-201ENST00000359947 NCKAP1LP55160 1127 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 ERVK-9P63128 1117 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 ERVK-24P63145 666 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 MAP3K10Q02779 954 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 GRB10Q13322 594 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 ATG4AQ8WYN0 398 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 KANSL3Q9P2N6 904 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 NR2E3Q9Y5X4 410 aa16.12■□□□□ 0.17
PTPRF-201ENST00000359947 PDZK1P1A8MUH7 402 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 SEMA3FQ13275 785 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 LVRNQ6Q4G3 990 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 THUMPD3Q9BV44 507 aaKnown RBP16.11■□□□□ 0.17
PTPRF-201ENST00000359947 LOC100653049A0A140TA62 436 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 KRT34O76011 436 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 SNRPAP09012 282 aaKnown RBP16.11■□□□□ 0.17
PTPRF-201ENST00000359947 IRAK1BP1Q5VVH5 260 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 GRAMD4Q6IC98 578 aa16.11■□□□□ 0.17
PTPRF-201ENST00000359947 PTAR1Q7Z6K3 402 aaPredicted RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms