RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 CCDC3Q9BQI4 270 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 TBCDQ9BTW9 1192 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 APEX2Q9UBZ4 518 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 ZNF229Q9UJW7 825 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 PTCH1Q13635 1447 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 TOP2BQ02880 1626 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 ABCA10Q8WWZ4 1543 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 MAGI2Q86UL8 1455 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 FMO5P49326 533 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 NR1H3Q13133 447 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 EARS2Q5JPH6 523 aaKnown RBP7.62□□□□□ -1.19
VPS13A-202ENST00000357409 TYW3Q6IPR3 259 aaKnown RBP7.62□□□□□ -1.19
VPS13A-202ENST00000357409 TMEM154Q6P9G4 183 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 ZCCHC23Q6ZST2 131 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 FAM172AQ8WUF8 416 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 LGMNQ99538 433 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 PLEKHG1Q9ULL1 1385 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 A0A087WUV0 522 aaPredicted RBP7.62□□□□□ -1.19
VPS13A-202ENST00000357409 NTRK1P04629 796 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 NFICP08651 508 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 LAMC2Q13753 1193 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 TRIM42Q8IWZ5 723 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 ARRDC4Q8NCT1 418 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 FEZF2Q8TBJ5 459 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 LRRC37BQ96QE4 947 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 TSEN34Q9BSV6 310 aaKnown RBP7.62□□□□□ -1.19
VPS13A-202ENST00000357409 ALG6Q9Y672 507 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 ATP10DQ9P241 1426 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 PEG3Q9GZU2 1588 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 LMNAP02545 664 aaKnown RBP7.62□□□□□ -1.19
VPS13A-202ENST00000357409 CTCFP49711 727 aaPredicted RBP7.62□□□□□ -1.19
VPS13A-202ENST00000357409 PHKG1Q16816 387 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 LRRC73Q5JTD7 316 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 LUZP2Q86TE4 346 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 HORMAD1Q86X24 394 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 RXFP2Q8WXD0 754 aa7.62□□□□□ -1.19
VPS13A-202ENST00000357409 SETD1BQ9UPS6 1966 aaKnown RBP7.61□□□□□ -1.19
VPS13A-202ENST00000357409 WNT10BO00744 389 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 ANGPT2O15123 496 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 EPHB3P54753 998 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 TFDP3Q5H9I0 405 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 DNAJC14Q6Y2X3 702 aaPredicted RBP7.61□□□□□ -1.19
VPS13A-202ENST00000357409 TRAPPC5Q8IUR0 188 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 CATSPERBQ9H7T0 1116 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 GOLGA2P5Q9HBQ8 144 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 CYLDQ9NQC7 956 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.61□□□□□ -1.191e-6■■■□□ 16
VPS13A-202ENST00000357409 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.61□□□□□ -1.19
VPS13A-202ENST00000357409 ABCC2Q92887 1545 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 HLA-DQA2P01906 255 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 PRIM2P49643 509 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 ITGA8P53708 1063 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 BACE1P56817 501 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 ZNF200P98182 395 aaPredicted RBP7.61□□□□□ -1.19
VPS13A-202ENST00000357409 OLFML2BQ68BL8 750 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 ADGRA1Q86SQ6 560 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 KCNB2Q92953 911 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 REXO4Q9GZR2 422 aaKnown RBP7.61□□□□□ -1.19
VPS13A-202ENST00000357409 SNCAIPQ9Y6H5 919 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 METTL16Q86W50 562 aaKnown RBP7.61□□□□□ -1.19
VPS13A-202ENST00000357409 SCFD2Q8WU76 684 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 APBA2Q99767 749 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 TRMT6Q9UJA5 497 aaKnown RBP7.61□□□□□ -1.19
VPS13A-202ENST00000357409 SOAT2O75908 522 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 ADCY2Q08462 1091 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 ANKS6Q68DC2 871 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 TRPM4Q8TD43 1214 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 FERD3LQ96RJ6 166 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 PKD2L2Q9NZM6 624 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 H2AFYO75367 372 aaKnown RBP7.61□□□□□ -1.19
VPS13A-202ENST00000357409 DGAT1O75907 488 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 ATP6V1B1P15313 513 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 CHN1P15882 459 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 SCNN1GP51170 649 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 HIRAP54198 1017 aaPredicted RBP7.61□□□□□ -1.19
VPS13A-202ENST00000357409 PTK7Q13308 1070 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 ILDR2Q71H61 639 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 TTC7BQ86TV6 843 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 ZNF280BQ86YH2 543 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 ARHGEF26Q96DR7 871 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 MTERF3Q96E29 417 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 MCRS1Q96EZ8 462 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 SNF8Q96H20 258 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 SEPHS2Q99611 448 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 ZC3H7BQ9UGR2 993 aaKnown RBP7.61□□□□□ -1.19
VPS13A-202ENST00000357409 SCOCQ9UIL1 159 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 NFKB1P19838 968 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 STX3Q13277 289 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 ZNF284Q2VY69 593 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 DENND1CQ8IV53 801 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 LGI2Q8N0V4 545 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 COLGALT1Q8NBJ5 622 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 PLEKHA8Q96JA3 519 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 SERAC1Q96JX3 654 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 PWWP2AQ96N64 755 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 CRAMP1Q96RY5 1269 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 OSBPL8Q9BZF1 889 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 NUP160Q12769 1436 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 LGALS16A8MUM7 142 aa7.61□□□□□ -1.19
VPS13A-202ENST00000357409 RAD51CO43502 376 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms