RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 SNAI1O95863 264 aaPredicted RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 CALCAP01258 141 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 NR3C1P04150 777 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 F13BP05160 661 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 ASNSP08243 561 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 HOXC6P09630 235 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 CTNNA2P26232 953 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 ALDH5A1P51649 535 aaPredicted RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 KIF11P52732 1056 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 USP14P54578 494 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 IGBP1P78318 339 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 CYP27A1Q02318 531 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 ARHGAP1Q07960 439 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 ADCY2Q08462 1091 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 TRIM14Q14142 442 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 R3HDM1Q15032 1099 aaKnown RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 ZBTB6Q15916 424 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 BBS9Q3SYG4 887 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 XKR4Q5GH76 650 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 ODR4Q5SWX8 454 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 OTUD1Q5VV17 481 aaPredicted RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 TTC27Q6P3X3 843 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 CPLX2Q6PUV4 134 aaKnown RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 CYP26C1Q6V0L0 522 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 USP53Q70EK8 1073 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 BHLHA9Q7RTU4 235 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 SRGAP1Q7Z6B7 1085 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 GPBP1Q86WP2 473 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 FMNL3Q8IVF7 1028 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 PLD6Q8N2A8 252 aaKnown RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 CBARPQ8N350 705 aaPredicted RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 ZNF276Q8N554 614 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 CCDC12Q8WUD4 166 aaPredicted RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 SLC20A1Q8WUM9 679 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 SHC3Q92529 594 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 ALG3Q92685 438 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 ZBTB10Q96DT7 871 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 MFSD3Q96ES6 412 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 CDC6Q99741 560 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 ASPNQ9BXN1 380 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 NFKBIZQ9BYH8 718 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 RAVER2Q9HCJ3 691 aaKnown RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 TOMM22Q9NS69 142 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 RMND1Q9NWS8 449 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 GRHL1Q9NZI5 618 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 CLEC1BQ9P126 229 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 CDC23Q9UJX2 597 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 PCDHA13Q9Y5I0 950 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 SNX11Q9Y5W9 270 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 ST14Q9Y5Y6 855 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 TP53BP1Q12888 1972 aaPredicted RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 EMSYQ7Z589 1322 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 TCRBV7S2A1N4TA0A589 114 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 ANO9A1A5B4 782 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 HAS3O00219 553 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 NCK2O43639 380 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 SMC2O95347 1197 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 AMHP03971 560 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 TUBB4AP04350 444 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 GLI1P08151 1106 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 PLS3P13797 630 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 UBA1P22314 1058 aaKnown RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 GLRA2P23416 452 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 ADCYAP1R1P41586 468 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 NPTX2P47972 431 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 MARCKSL1P49006 195 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 FMO5P49326 533 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 RAB27AP51159 221 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 NFKB2Q00653 900 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 FKBP3Q00688 224 aaKnown RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 MCL1Q07820 350 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 PLS1Q14651 629 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 ODF1Q14990 250 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 SAFBQ15424 915 aaKnown RBP eCLIP2.5□□□□□ -2.01
VPS54-202ENST00000354504 FAM153CQ494X1 144 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 TBC1D10BQ4KMP7 808 aaPredicted RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 TTMPQ5BVD1 217 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 FAM26FQ5R3K3 315 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 PLA2G4FQ68DD2 849 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 MCTP2Q6DN12 878 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 CCSAPQ6IQ19 270 aaPredicted RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 AADACL2Q6P093 401 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 BEND4Q6ZU67 534 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 MON1BQ7L1V2 547 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 TMTC1Q8IUR5 882 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 CNGA4Q8IV77 575 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 SPACA3Q8IXA5 215 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 IQCKQ8N0W5 287 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 MREGQ8N565 214 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 CSGALNACT2Q8N6G5 542 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 RCBTB1Q8NDN9 531 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 OR8K1Q8NGG5 319 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 NPLOC4Q8TAT6 608 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 FAM71BQ8TC56 605 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 PARD3BQ8TEW8 1205 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 KAT2BQ92831 832 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 UTP4Q969X6 686 aaKnown RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 HOOK2Q96ED9 719 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 GPR20Q99678 358 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 GORASP1Q9BQQ3 440 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms