RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 EMID1Q96A84 441 aaPredicted RBP23.14■■□□□ 1.3
UPF3A-201ENST00000351487 PAIP2Q9BPZ3 127 aaKnown RBP23.14■■□□□ 1.3
UPF3A-201ENST00000351487 CD248Q9HCU0 757 aa23.14■■□□□ 1.3
UPF3A-201ENST00000351487 TCRBV7S3A2A0A539 114 aa23.14■■□□□ 1.29
UPF3A-201ENST00000351487 VTNP04004 478 aa23.14■■□□□ 1.29
UPF3A-201ENST00000351487 CA4P22748 312 aa23.14■■□□□ 1.29
UPF3A-201ENST00000351487 FAM47CQ5HY64 1035 aa23.14■■□□□ 1.29
UPF3A-201ENST00000351487 GJC2Q5T442 439 aaPredicted RBP23.14■■□□□ 1.29
UPF3A-201ENST00000351487 MAMDC4Q6UXC1 1216 aa23.14■■□□□ 1.29
UPF3A-201ENST00000351487 PPP1R16BQ96T49 567 aa23.14■■□□□ 1.29
UPF3A-201ENST00000351487 MAK16Q9BXY0 300 aaKnown RBP23.14■■□□□ 1.29
UPF3A-201ENST00000351487 ECT2Q9H8V3 914 aa23.14■■□□□ 1.29
UPF3A-201ENST00000351487 STAU2Q9NUL3 570 aaKnown RBP eCLIP23.14■■□□□ 1.29
UPF3A-201ENST00000351487 DPP3Q9NY33 737 aa23.14■■□□□ 1.29
UPF3A-201ENST00000351487 XPO7Q9UIA9 1087 aaKnown RBP23.14■■□□□ 1.29
UPF3A-201ENST00000351487 TSPAN16Q9UKR8 245 aa23.14■■□□□ 1.29
UPF3A-201ENST00000351487 GRID1Q9ULK0 1009 aa23.14■■□□□ 1.29
UPF3A-201ENST00000351487 TRIP11Q15643 1979 aa23.14■■□□□ 1.29
UPF3A-201ENST00000351487 A0A1W2PPM1 405 aa23.13■■□□□ 1.29
UPF3A-201ENST00000351487 TSPAN1O60635 241 aa23.13■■□□□ 1.29
UPF3A-201ENST00000351487 RNASELQ05823 741 aaKnown RBP23.13■■□□□ 1.29
UPF3A-201ENST00000351487 CBLBQ13191 982 aa23.13■■□□□ 1.29
UPF3A-201ENST00000351487 TFDP2Q14188 446 aa23.13■■□□□ 1.29
UPF3A-201ENST00000351487 DPYSL3Q14195 570 aa23.13■■□□□ 1.29
UPF3A-201ENST00000351487 STILQ15468 1287 aa23.13■■□□□ 1.29
UPF3A-201ENST00000351487 C3orf62Q6ZUJ4 267 aa23.13■■□□□ 1.29
UPF3A-201ENST00000351487 FAM183BPQ6ZVS7 135 aa23.13■■□□□ 1.29
UPF3A-201ENST00000351487 RXFP2Q8WXD0 754 aa23.13■■□□□ 1.29
UPF3A-201ENST00000351487 ACAP3Q96P50 834 aa23.13■■□□□ 1.29
UPF3A-201ENST00000351487 PAFAH2Q99487 392 aa23.13■■□□□ 1.29
UPF3A-201ENST00000351487 NT5C1AQ9BXI3 368 aa23.13■■□□□ 1.29
UPF3A-201ENST00000351487 VTA1Q9NP79 307 aa23.13■■□□□ 1.29
UPF3A-201ENST00000351487 E5RJQ4 531 aa23.13■■□□□ 1.29
UPF3A-201ENST00000351487 PFKMP08237 780 aa23.13■■□□□ 1.29
UPF3A-201ENST00000351487 CDH6P55285 790 aa23.13■■□□□ 1.29
UPF3A-201ENST00000351487 ROR1Q01973 937 aa23.13■■□□□ 1.29
UPF3A-201ENST00000351487 RIPK1Q13546 671 aa23.13■■□□□ 1.29
UPF3A-201ENST00000351487 EFTUD2Q15029 972 aaKnown RBP eCLIP23.13■■□□□ 1.292e-6■■■□□ 15.3
UPF3A-201ENST00000351487 FAM47EQ6ZV65 393 aa23.13■■□□□ 1.29
UPF3A-201ENST00000351487 ECHDC2Q86YB7 292 aa23.13■■□□□ 1.29
UPF3A-201ENST00000351487 MZB1Q8WU39 189 aa23.13■■□□□ 1.29
UPF3A-201ENST00000351487 GBA2Q9HCG7 927 aaPredicted RBP23.13■■□□□ 1.29
UPF3A-201ENST00000351487 A0A1B0GUA9 196 aa23.12■■□□□ 1.29
UPF3A-201ENST00000351487 RBM47A0AV96 593 aaKnown RBP23.12■■□□□ 1.29
UPF3A-201ENST00000351487 DPYSL4O14531 572 aa23.12■■□□□ 1.29
UPF3A-201ENST00000351487 ZWINTO95229 277 aa23.12■■□□□ 1.29
UPF3A-201ENST00000351487 PDGFRAP16234 1089 aa23.12■■□□□ 1.29
UPF3A-201ENST00000351487 SKIV2L2P42285 1042 aaKnown RBP23.12■■□□□ 1.29
UPF3A-201ENST00000351487 MMRN1Q13201 1228 aa23.12■■□□□ 1.29
UPF3A-201ENST00000351487 DNAJC3Q13217 504 aa23.12■■□□□ 1.29
UPF3A-201ENST00000351487 TTLL12Q14166 644 aaPredicted RBP23.12■■□□□ 1.29
UPF3A-201ENST00000351487 SLC1A5Q15758 541 aa23.12■■□□□ 1.29
UPF3A-201ENST00000351487 ZNF792Q3KQV3 632 aa23.12■■□□□ 1.29
UPF3A-201ENST00000351487 SH3PXD2AQ5TCZ1 1133 aa23.12■■□□□ 1.29
UPF3A-201ENST00000351487 MTHFD1LQ6UB35 978 aa23.12■■□□□ 1.29
UPF3A-201ENST00000351487 FBF1Q8TES7 1133 aa23.12■■□□□ 1.29
UPF3A-201ENST00000351487 PIWIL1Q96J94 861 aaKnown RBP23.12■■□□□ 1.29
UPF3A-201ENST00000351487 C16orf70Q9BSU1 422 aa23.12■■□□□ 1.29
UPF3A-201ENST00000351487 PHTF1Q9UMS5 762 aa23.12■■□□□ 1.29
UPF3A-201ENST00000351487 NQO1P15559 274 aaKnown RBP23.12■■□□□ 1.29
UPF3A-201ENST00000351487 BASP1P80723 227 aaKnown RBP23.12■■□□□ 1.29
UPF3A-201ENST00000351487 OR6B2Q6IFH4 312 aa23.12■■□□□ 1.29
UPF3A-201ENST00000351487 TBC1D1Q86TI0 1168 aaPredicted RBP23.12■■□□□ 1.29
UPF3A-201ENST00000351487 ANKLE1Q8NAG6 615 aa23.12■■□□□ 1.29
UPF3A-201ENST00000351487 SCN1AP35498 2009 aa23.11■■□□□ 1.29
UPF3A-201ENST00000351487 PRPSAP2O60256 369 aa23.11■■□□□ 1.29
UPF3A-201ENST00000351487 EDF1O60869 148 aaKnown RBP23.11■■□□□ 1.29
UPF3A-201ENST00000351487 ATP6V1G2O95670 118 aa23.11■■□□□ 1.29
UPF3A-201ENST00000351487 KRT4P19013 534 aa23.11■■□□□ 1.29
UPF3A-201ENST00000351487 GTF3C2Q8WUA4 911 aaPredicted RBP23.11■■□□□ 1.29
UPF3A-201ENST00000351487 AFG1LQ8WV93 481 aa23.11■■□□□ 1.29
UPF3A-201ENST00000351487 USP6NLQ92738 828 aa23.11■■□□□ 1.29
UPF3A-201ENST00000351487 MRRFQ96E11 262 aaKnown RBP23.11■■□□□ 1.29
UPF3A-201ENST00000351487 ZNF286BP0CG31 522 aa23.1■■□□□ 1.29
UPF3A-201ENST00000351487 CCNB1P14635 433 aa23.1■■□□□ 1.29
UPF3A-201ENST00000351487 GRM5P41594 1212 aa23.1■■□□□ 1.29
UPF3A-201ENST00000351487 KCNJ11Q14654 390 aa23.1■■□□□ 1.29
UPF3A-201ENST00000351487 PDK2Q15119 407 aa23.1■■□□□ 1.29
UPF3A-201ENST00000351487 C15orf59Q2T9L4 293 aaPredicted RBP23.1■■□□□ 1.29
UPF3A-201ENST00000351487 BBS9Q3SYG4 887 aa23.1■■□□□ 1.29
UPF3A-201ENST00000351487 ASRGL1Q7L266 308 aa23.1■■□□□ 1.29
UPF3A-201ENST00000351487 DPH6Q7L8W6 267 aa23.1■■□□□ 1.29
UPF3A-201ENST00000351487 VSIG1Q86XK7 387 aa23.1■■□□□ 1.29
UPF3A-201ENST00000351487 PALM2Q8IXS6 379 aa23.1■■□□□ 1.29
UPF3A-201ENST00000351487 LRRC8CQ8TDW0 803 aa23.1■■□□□ 1.29
UPF3A-201ENST00000351487 DCAKDQ8WVC6 231 aa23.1■■□□□ 1.29
UPF3A-201ENST00000351487 NLRP7Q8WX94 980 aa23.1■■□□□ 1.29
UPF3A-201ENST00000351487 SPOCK2Q92563 424 aa23.1■■□□□ 1.29
UPF3A-201ENST00000351487 RNF157Q96PX1 679 aa23.1■■□□□ 1.29
UPF3A-201ENST00000351487 PNMA3Q9UL41 463 aa23.1■■□□□ 1.29
UPF3A-201ENST00000351487 KAT6AQ92794 2004 aa23.1■■□□□ 1.29
UPF3A-201ENST00000351487 ATP2A2P16615 1042 aaKnown RBP23.1■■□□□ 1.29
UPF3A-201ENST00000351487 YARSP54577 528 aaKnown RBP23.1■■□□□ 1.29
UPF3A-201ENST00000351487 PKDCCQ504Y2 493 aa23.1■■□□□ 1.29
UPF3A-201ENST00000351487 DARS2Q6PI48 645 aaKnown RBP23.1■■□□□ 1.29
UPF3A-201ENST00000351487 NPNTQ6UXI9 565 aa23.1■■□□□ 1.29
UPF3A-201ENST00000351487 TEKT4Q8WW24 435 aa23.1■■□□□ 1.29
UPF3A-201ENST00000351487 ALKBH8Q96BT7 664 aaKnown RBP23.1■■□□□ 1.29
UPF3A-201ENST00000351487 KIF12Q96FN5 646 aa23.1■■□□□ 1.29
UPF3A-201ENST00000351487 CHADO15335 359 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms