RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 NT5C1AQ9BXI3 368 aa16.16■□□□□ 0.18
UPF3B-202ENST00000345865 GBA2Q9HCG7 927 aaPredicted RBP16.16■□□□□ 0.18
UPF3B-202ENST00000345865 PRKAG3Q9UGI9 489 aa16.16■□□□□ 0.18
UPF3B-202ENST00000345865 COL1A2P08123 1366 aa16.16■□□□□ 0.18
UPF3B-202ENST00000345865 PDHXO00330 501 aa16.16■□□□□ 0.18
UPF3B-202ENST00000345865 UBOX5O94941 541 aa16.16■□□□□ 0.18
UPF3B-202ENST00000345865 STAU1O95793 577 aaKnown RBP16.16■□□□□ 0.18
UPF3B-202ENST00000345865 SMPD1P17405 629 aa16.16■□□□□ 0.18
UPF3B-202ENST00000345865 HOXA11P31270 313 aaPredicted RBP16.16■□□□□ 0.18
UPF3B-202ENST00000345865 MGAT5Q09328 741 aa16.16■□□□□ 0.18
UPF3B-202ENST00000345865 MKRN3Q13064 507 aaKnown RBP16.16■□□□□ 0.18
UPF3B-202ENST00000345865 DPYSL3Q14195 570 aa16.16■□□□□ 0.18
UPF3B-202ENST00000345865 EFHC2Q5JST6 749 aa16.16■□□□□ 0.18
UPF3B-202ENST00000345865 SYCP2LQ5T4T6 812 aa16.16■□□□□ 0.18
UPF3B-202ENST00000345865 SPATA21Q7Z572 469 aa16.16■□□□□ 0.18
UPF3B-202ENST00000345865 ZC3H18Q86VM9 953 aaKnown RBP16.16■□□□□ 0.18
UPF3B-202ENST00000345865 ZC3H15Q8WU90 426 aaKnown RBP16.16■□□□□ 0.18
UPF3B-202ENST00000345865 KHSRPQ92945 711 aaKnown RBP eCLIP16.16■□□□□ 0.188e-7■■■□□ 16.1
UPF3B-202ENST00000345865 SLC10A4Q96EP9 437 aa16.16■□□□□ 0.18
UPF3B-202ENST00000345865 LPIN3Q9BQK8 851 aa16.16■□□□□ 0.18
UPF3B-202ENST00000345865 MAK16Q9BXY0 300 aaKnown RBP16.16■□□□□ 0.18
UPF3B-202ENST00000345865 CDHR5Q9HBB8 845 aa16.16■□□□□ 0.18
UPF3B-202ENST00000345865 E7ESA3 106 aa16.15■□□□□ 0.18
UPF3B-202ENST00000345865 KRT15P19012 456 aa16.15■□□□□ 0.18
UPF3B-202ENST00000345865 IL4RP24394 825 aa16.15■□□□□ 0.18
UPF3B-202ENST00000345865 RPA3P35244 121 aaPredicted RBP16.15■□□□□ 0.18
UPF3B-202ENST00000345865 GRM5P41594 1212 aa16.15■□□□□ 0.18
UPF3B-202ENST00000345865 ATP11AP98196 1134 aa16.15■□□□□ 0.18
UPF3B-202ENST00000345865 GOLGA7BQ2TAP0 167 aa16.15■□□□□ 0.18
UPF3B-202ENST00000345865 CCDC14Q49A88 953 aa16.15■□□□□ 0.18
UPF3B-202ENST00000345865 PKDCCQ504Y2 493 aa16.15■□□□□ 0.18
UPF3B-202ENST00000345865 PPP1R21Q6ZMI0 780 aa16.15■□□□□ 0.18
UPF3B-202ENST00000345865 ACOT1Q86TX2 421 aa16.15■□□□□ 0.18
UPF3B-202ENST00000345865 IGDCC3Q8IVU1 814 aa16.15■□□□□ 0.18
UPF3B-202ENST00000345865 PYROXD1Q8WU10 500 aa16.15■□□□□ 0.18
UPF3B-202ENST00000345865 RMDN2Q96LZ7 410 aa16.15■□□□□ 0.18
UPF3B-202ENST00000345865 PAIP2Q9BPZ3 127 aaKnown RBP16.15■□□□□ 0.18
UPF3B-202ENST00000345865 RSAD1Q9HA92 442 aa16.15■□□□□ 0.18
UPF3B-202ENST00000345865 GPATCH2LQ9NWQ4 482 aa16.15■□□□□ 0.18
UPF3B-202ENST00000345865 SNTG2Q9NY99 539 aa16.15■□□□□ 0.18
UPF3B-202ENST00000345865 GJD2Q9UKL4 321 aa16.15■□□□□ 0.18
UPF3B-202ENST00000345865 GINS2Q9Y248 185 aa16.15■□□□□ 0.18
UPF3B-202ENST00000345865 HES2Q9Y543 173 aa16.15■□□□□ 0.18
UPF3B-202ENST00000345865 PRPF4O43172 522 aaKnown RBP eCLIP16.14■□□□□ 0.18
UPF3B-202ENST00000345865 HCRTO43612 131 aa16.14■□□□□ 0.18
UPF3B-202ENST00000345865 NPTXRO95502 500 aa16.14■□□□□ 0.18
UPF3B-202ENST00000345865 ARL4CP56559 192 aa16.14■□□□□ 0.18
UPF3B-202ENST00000345865 NOMO1Q15155 1222 aa16.14■□□□□ 0.18
UPF3B-202ENST00000345865 CYB5D1Q6P9G0 228 aa16.14■□□□□ 0.18
UPF3B-202ENST00000345865 C3orf62Q6ZUJ4 267 aa16.14■□□□□ 0.18
UPF3B-202ENST00000345865 FAM47EQ6ZV65 393 aa16.14■□□□□ 0.18
UPF3B-202ENST00000345865 FBXO36Q8NEA4 188 aa16.14■□□□□ 0.18
UPF3B-202ENST00000345865 SGSM3Q96HU1 749 aa16.14■□□□□ 0.18
UPF3B-202ENST00000345865 MS4A4AQ96JQ5 239 aa16.14■□□□□ 0.18
UPF3B-202ENST00000345865 EIF2AQ9BY44 585 aaKnown RBP16.14■□□□□ 0.18
UPF3B-202ENST00000345865 FAM49BQ9NUQ9 324 aa16.14■□□□□ 0.18
UPF3B-202ENST00000345865 SETD4Q9NVD3 440 aa16.14■□□□□ 0.18
UPF3B-202ENST00000345865 XPO7Q9UIA9 1087 aaKnown RBP16.14■□□□□ 0.18
UPF3B-202ENST00000345865 PNMA3Q9UL41 463 aa16.14■□□□□ 0.18
UPF3B-202ENST00000345865 BTBD19C9JJ37 291 aa16.14■□□□□ 0.17
UPF3B-202ENST00000345865 MCF2LO15068 1137 aa16.14■□□□□ 0.17
UPF3B-202ENST00000345865 TYROBPO43914 113 aa16.14■□□□□ 0.17
UPF3B-202ENST00000345865 SUN1O94901 812 aa16.14■□□□□ 0.17
UPF3B-202ENST00000345865 MMP3P08254 477 aa16.14■□□□□ 0.17
UPF3B-202ENST00000345865 BASP1P80723 227 aaKnown RBP16.14■□□□□ 0.17
UPF3B-202ENST00000345865 NR1H3Q13133 447 aa16.14■□□□□ 0.17
UPF3B-202ENST00000345865 MTFR1Q15390 333 aa16.14■□□□□ 0.17
UPF3B-202ENST00000345865 SLC1A5Q15758 541 aa16.14■□□□□ 0.17
UPF3B-202ENST00000345865 KYAT1Q16773 422 aa16.14■□□□□ 0.17
UPF3B-202ENST00000345865 GALNTL6Q49A17 601 aa16.14■□□□□ 0.17
UPF3B-202ENST00000345865 ZC3H12AQ5D1E8 599 aaKnown RBP16.14■□□□□ 0.17
UPF3B-202ENST00000345865 OLFML1Q6UWY5 402 aa16.14■□□□□ 0.17
UPF3B-202ENST00000345865 L3MBTL3Q96JM7 780 aaPredicted RBP16.14■□□□□ 0.17
UPF3B-202ENST00000345865 B3GNT5Q9BYG0 378 aa16.14■□□□□ 0.17
UPF3B-202ENST00000345865 PSMC3IPQ9P2W1 217 aaPredicted RBP16.14■□□□□ 0.17
UPF3B-202ENST00000345865 TUBGCP4Q9UGJ1 667 aa16.14■□□□□ 0.17
UPF3B-202ENST00000345865 SLC24A2Q9UI40 661 aa16.14■□□□□ 0.17
UPF3B-202ENST00000345865 SNX9Q9Y5X1 595 aa16.14■□□□□ 0.17
UPF3B-202ENST00000345865 GSTA1P08263 222 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 FGFR1P11362 822 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 GEMIN4P57678 1058 aaKnown RBP16.13■□□□□ 0.17
UPF3B-202ENST00000345865 CCNA1P78396 465 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 RASA2Q15283 850 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 CA9Q16790 459 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 BBS9Q3SYG4 887 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 C1orf228Q6PIY5 440 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 SCUBE3Q8IX30 993 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 FITM2Q8N6M3 262 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 ANKLE1Q8NAG6 615 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 FBF1Q8TES7 1133 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 LRRN4Q8WUT4 740 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 C18orf25Q96B23 403 aaPredicted RBP16.13■□□□□ 0.17
UPF3B-202ENST00000345865 ADAMTS10Q9H324 1103 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 VGLL3A8MV65 326 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 MAP3K6O95382 1288 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 TFE3P19532 575 aaPredicted RBP16.13■□□□□ 0.17
UPF3B-202ENST00000345865 IL9RQ01113 521 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 DNAJC3Q13217 504 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 GLRA4Q5JXX5 417 aa16.13■□□□□ 0.17
UPF3B-202ENST00000345865 DARS2Q6PI48 645 aaKnown RBP16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms