RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 VTI1AQ96AJ9 217 aa14.02□□□□□ -0.16
CCDC88C-201ENST00000331194 TRIM56Q9BRZ2 755 aaKnown RBP14.02□□□□□ -0.16
CCDC88C-201ENST00000331194 ZNF577Q9BSK1 485 aa14.02□□□□□ -0.16
CCDC88C-201ENST00000331194 CCDC28BQ9BUN5 200 aa14.02□□□□□ -0.16
CCDC88C-201ENST00000331194 ARHGEF38Q9NXL2 777 aa14.02□□□□□ -0.16
CCDC88C-201ENST00000331194 KCNK4Q9NYG8 393 aa14.02□□□□□ -0.16
CCDC88C-201ENST00000331194 POLLQ9UGP5 575 aa14.02□□□□□ -0.16
CCDC88C-201ENST00000331194 SHOC2Q9UQ13 582 aa14.02□□□□□ -0.16
CCDC88C-201ENST00000331194 LZTS1Q9Y250 596 aa14.02□□□□□ -0.16
CCDC88C-201ENST00000331194 INPP5FQ9Y2H2 1132 aa14.02□□□□□ -0.16
CCDC88C-201ENST00000331194 GAKO14976 1311 aa14.02□□□□□ -0.17
CCDC88C-201ENST00000331194 TCRBV9S1A1TA0A576 114 aa14.02□□□□□ -0.17
CCDC88C-201ENST00000331194 TRIM49D1C9J1S8 452 aa14.02□□□□□ -0.17
CCDC88C-201ENST00000331194 COPEO14579 308 aa14.02□□□□□ -0.17
CCDC88C-201ENST00000331194 LYPLA1O75608 230 aaPredicted RBP14.02□□□□□ -0.17
CCDC88C-201ENST00000331194 CLPTM1O96005 669 aa14.02□□□□□ -0.17
CCDC88C-201ENST00000331194 PMLP29590 882 aa14.02□□□□□ -0.17
CCDC88C-201ENST00000331194 YWHAGP61981 247 aaKnown RBP eCLIP14.02□□□□□ -0.17
CCDC88C-201ENST00000331194 GRAPQ13588 217 aa14.02□□□□□ -0.17
CCDC88C-201ENST00000331194 ANKRD20A4Q4UJ75 823 aa14.02□□□□□ -0.17
CCDC88C-201ENST00000331194 KCNT1Q5JUK3 1230 aa14.02□□□□□ -0.17
CCDC88C-201ENST00000331194 B3GNT6Q6ZMB0 384 aa14.02□□□□□ -0.17
CCDC88C-201ENST00000331194 RSPH3Q86UC2 560 aa14.02□□□□□ -0.17
CCDC88C-201ENST00000331194 MAP7D3Q8IWC1 876 aa14.02□□□□□ -0.17
CCDC88C-201ENST00000331194 PIP4K2CQ8TBX8 421 aa14.02□□□□□ -0.17
CCDC88C-201ENST00000331194 GRAPLQ8TC17 118 aaPredicted RBP14.02□□□□□ -0.17
CCDC88C-201ENST00000331194 IQCGQ9H095 443 aaKnown RBP14.02□□□□□ -0.17
CCDC88C-201ENST00000331194 TMEM206Q9H813 350 aa14.02□□□□□ -0.17
CCDC88C-201ENST00000331194 GPAMQ9HCL2 828 aa14.02□□□□□ -0.17
CCDC88C-201ENST00000331194 ZDHHC7Q9NXF8 308 aa14.02□□□□□ -0.17
CCDC88C-201ENST00000331194 SNCAIPQ9Y6H5 919 aa14.02□□□□□ -0.17
CCDC88C-201ENST00000331194 IKBKGQ9Y6K9 419 aa14.02□□□□□ -0.17
CCDC88C-201ENST00000331194 SBF2Q86WG5 1849 aa14.02□□□□□ -0.17
CCDC88C-201ENST00000331194 SMIM31A0A1B0GVY4 71 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 CXorf49A8MYA2 514 aaPredicted RBP14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 I3L4J1 428 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 CD1EP15812 388 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 CHRNA5P30532 468 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 RPL22P35268 128 aaKnown RBP14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 MSX2P35548 267 aaPredicted RBP14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 RGS2P41220 211 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 GPC3P51654 580 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 EMP3P54852 163 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 BASP1P80723 227 aaKnown RBP14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 OGDHQ02218 1023 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 ZNF252P-AS1Q0IIN9 211 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 PTP4A2Q12974 167 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 C1orf228Q6PIY5 440 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 E2F7Q96AV8 911 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 XPO7Q9UIA9 1087 aaKnown RBP14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 ZNF711Q9Y462 761 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 TTLL13PA6NNM8 815 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 KBTBD13C9JR72 458 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 H3BSA7 217 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 BOLA2-SMG1P6H3BVE0 249 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 ATP9BO43861 1147 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 FKBP6O75344 327 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 FOSP01100 380 aaPredicted RBP14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 INHBAP08476 426 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 MRPS5P82675 430 aaKnown RBP14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 KLHL38Q2WGJ6 581 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 DNAL1Q4LDG9 190 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 SH3D19Q5HYK7 790 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 UNC45BQ8IWX7 931 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 PPM1NQ8N819 430 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 ACTL9Q8TC94 416 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 CNBD2Q96M20 576 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 PTTG2Q9NZH5 202 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 SOX13Q9UN79 622 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 POLRMTO00411 1230 aaKnown RBP14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 EIF4BP23588 611 aaKnown RBP14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 ALDH1B1P30837 517 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 OTUD4Q01804 1114 aaKnown RBP14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 SFSWAPQ12872 951 aaKnown RBP14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 NAT8LQ8N9F0 302 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 GAB3Q8WWW8 586 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 ALKBH8Q96BT7 664 aaKnown RBP14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 CFAP36Q96G28 342 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 TMEM8AQ9HCN3 771 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 XPNPEP1Q9NQW7 623 aa14.01□□□□□ -0.17
CCDC88C-201ENST00000331194 ATXN3P54252 364 aaPredicted RBP14□□□□□ -0.17
CCDC88C-201ENST00000331194 COG7P83436 770 aa14□□□□□ -0.17
CCDC88C-201ENST00000331194 CIAPIN1Q6FI81 312 aa14□□□□□ -0.17
CCDC88C-201ENST00000331194 TRIM67Q6ZTA4 783 aa14□□□□□ -0.17
CCDC88C-201ENST00000331194 RCOR2Q8IZ40 523 aa14□□□□□ -0.17
CCDC88C-201ENST00000331194 ZNRF3Q9ULT6 936 aa14□□□□□ -0.17
CCDC88C-201ENST00000331194 STK24Q9Y6E0 443 aa14□□□□□ -0.17
CCDC88C-201ENST00000331194 hCG_1818297A0A087WSY0 165 aa14□□□□□ -0.17
CCDC88C-201ENST00000331194 H0YIN7 160 aa14□□□□□ -0.17
CCDC88C-201ENST00000331194 NDUFB10O96000 172 aa14□□□□□ -0.17
CCDC88C-201ENST00000331194 SLC5A2P31639 672 aa14□□□□□ -0.17
CCDC88C-201ENST00000331194 NCKAP1LP55160 1127 aa14□□□□□ -0.17
CCDC88C-201ENST00000331194 SLC18A2Q05940 514 aa14□□□□□ -0.17
CCDC88C-201ENST00000331194 PPP6R3Q5H9R7 873 aaPredicted RBP14□□□□□ -0.17
CCDC88C-201ENST00000331194 NUDCD3Q8IVD9 361 aa14□□□□□ -0.17
CCDC88C-201ENST00000331194 PPIL6Q8IXY8 311 aa14□□□□□ -0.17
CCDC88C-201ENST00000331194 FAM71DQ8N9W8 422 aa14□□□□□ -0.17
CCDC88C-201ENST00000331194 ICA1LQ8NDH6 482 aa14□□□□□ -0.17
CCDC88C-201ENST00000331194 LRRN4Q8WUT4 740 aa14□□□□□ -0.17
CCDC88C-201ENST00000331194 ZNF516Q92618 1163 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms